Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01223 ATGCCACGGGAGAGGGATGGAGTTGTCTTTTTCGAAGACCTACCCGGTGCTTTATATGCAGGGTGTGGGGAGCATTATAGGGTGTCCTTCCAAAAGCAAGTGAAACCGGCGCTTTTCCGGCTACCTGCTCGTCAACTAAGGAAGAAGAGGACCGATGCTGGTGGTGAAAGTTCCGAGTCTCAAGATGGTGGTGGTCGTGGCTCTCAACGATCAGCTGAAAGGAGAGACGGCCCACAGCAACATGGTGGGAGTGGGTACCAGGGTGGTAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGCCAAGGCAGTGGTGGTCGTGGCCGAGGAACGTCACAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGAGGTGGGCCATATCAGCATGTAGCACGCAGTAACTATGGTGGTGGTAATCGTGGAGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCTCAGTGTATCAAGGAGGGATGACTCAGCCAGCCTCCTCTGTGGCGAGTTCTTCCTCCCACCCATCTTCTGATACTTCATCAATTGATCAACAATTTCAACAGGTTTCCATCCAACAGGAATCTTCTCAAAGCCAAGCAATTCAACCTGCACCGTCTAGTAAATCCATGAGATTCCCTCTGAGACCAGGCAAGGGTAGCTCTGGCATAAGGTGTATCGTTAAAGCTAACCACTTCTTTGCCGAGTTACCAGACAAAGATCTTCATCAGTATGATGTTACCATTACCCCAGAAGTCACTTCGCGGGTCTACAATCGAGCTGTAATGGAACAACTAGTGAAATTATATAGGGTCTCGCACCTTGGGGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTCATATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCCGGAGGACAAAGACGGGAGAAAGAATTTAAAGTTGTGATCAAGTTTGCTGCTCGTGCTGATCTGCACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCTGATGCCCCTCAAGAAGCCCTTCAAGTTCTGGATATTGTATTACGTGAACTGCCTACTTCAAGGCATAACTATTACTATACACCTCTGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAAGGGTTGGAAAGTTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGGCTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAACTTCTTAATCGTGATGTGTCGTCCAGACCATTATCTGATGCTGATCGTGTGAAGATAAAAAAGGCTCTCCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACAAGGGAGCTAACTTTCCCAGTTGATGAAAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTATGAAACATATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAACTATCTACCCATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCAAAAGATAGAGAAGAAGATATTATGCAGACGGTACGTCATAATGCATATCAAAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTATTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTCGGCCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGCAAACAGTACTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTTGGGGGAAGGAATACAGTACTTGTTGATGCGTTATCTAGGCGTATACCTTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGAGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGAATTATATTTTACAGGCATTTTCTTTTATCTCTTATCTATTGTCTCGTTGTGAAGAAAACATTATTTTACATCATTTTCATATGTTGTTTGTTTGATGTCTACCTGAAAATTATATCTTGCAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCGATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCACCTGTGACATTCGTTGTGGTACAGAAGCGTCATCACACTAGATTGTTTGCTAACAACCATTCTGATCGCCATGCAGTAGACAAGAGTGGGAACATATTACCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGATGGATTGCAGACTCTAACGAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCATTTCGAGCTCGTTTTTATATGGAACCTGAAACCTCCGATAGTGGGTCAATTAGCAGTGAGGCTGCTGCTGGACGTGGTGGCGTTGGTGCTCGCAGTACACGGGCACCGGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGATCACAAGGCAAAAGCAAGGCAATCATCACTTTATCATTAAGTTGAAAACTGTTTCAGAAGACAATAAGAAAGAAGGTTGTGTAATTATAGCCATGGAAGCAGCCAGTTTGATGAGATTAGACACACCAATTTCTGACAGTCTAAACAATGCATTGAGGAGATCCCATAACTCAATGAAGAAATGCTTTGCCAGGTTTGTTGAGAATGGGAAGAGGTTGATGAAATGCCAGGATTTGATGAAAGATGTGGAGATAACGATTGAAGATAAGCGTGAGAGAAACCATGTTTTGGAAGGCTTTCTTGGCTACATTCTGAGTAACACTCAGGAGGCTGCTGTTGTCCCTCCGAACATCGCTTTAGCCGTTAGGCCGAGTCCGGGTTTCTGGGAGTTCGTTAAGGTGAATGCTACAAGTTTGGAAGTAGGAGACCTTACTGTTTCAGAGGCAAATGATGAAAATGCTCTTGAGATAGATTTTCGAGCCATAGAATTCAGTGCCCCTCGCTTGAGCCTTCCTTCGTCGATTGGAAACGGAGTCAACTTGATCTCAAAATTCATCAGTTCAAGGTTTGGTGAGGATAAACAGAATGTCAAGGAACTTGTTGATTATCTGCTGGCTCTTCACCATCGAGGACAGAGTCTTATGATCAATAAGAAACTTAACACCGTTTCCAAGCTTCAATCGGCATTGTTTGCAGCTCAAGTATATCTATCTTCACTGCCAAAAGACACGCCATATGAAGAATTCAAGCACAAGATGAAAGGATGGGGATTTGAGAAAGGATGGGGAAGTACTTCAGAGAGGGCCAGAGAAACAATGTTAATCCTTTCTGAGGTCCTCCAGGCACCAGATCCAGCAAAATTGGAGTTACTGTTTAGCAGGCTTCCAACCACATTGAATATTGTAATCTTTTCACCTCACGGTTATTTCGGCCAGGCAGGCGTCCTCGGTTTGCCCGACACCGGCGGTCAGATTGTCTACATTCTGGATCAAGTGAGAGCTTTAGAAGAAGAGTTGCTGCACAGAATTGAACTGCAAGGCCTTCAAGCAAAGCCTCAGATTCTTGTGGTGACAAGATTAATACCCGATGCACGAGGGACGAAGTGCAATGTGGAGTTGGAGCCTATTGAAAACACAAAACATTCTCACATTCTCAGGGTGCCATTCTTCACACAAAATGGAGTTCTTCACCAATGGGTTTCACGCTTCGATGATGCCACTAGCAAGATCCTTGAAGTCATGGATTGCAAACCAGACCTCGTCATTGGCAACTACACTGATGGAAACTTGGTTGCTTCTTTGATGGCTAAGAAACTTGGAATTACACAGGGAACTATAGCACACGCTTTAGAGAAAACAAAATATGAGGATTCAGATGCTAAGTGGAAGGAACTTGATCCAAAGTATCATTTTTCATGTCAATTCACAGCTGATTTGATCTCAATGAATGCAACTGATTTCATTATAACAAGTACATATCAAGAAATTTCAGGAAGCAAAACCAGGCCAGGACAATATGAAAGCCATGAGGCCTTTACTATGCCTGGACTTTACAGGGTAGTCTCAGGGATTAATGTGTTTGACCCCAAATTCAACATTGCTGCTCCTGGGGCTGATCAATCTGTCTATTTTCCTTTCACTGAGAAATCAAAGCGACTGACTAATCTTCATCCCGATATCGAGGAACTACTTTATAGCAGAGAAAACAATGATGAACACATAGGTTACCTTGCAGATAAGAAGAAGCCAATTATTTTCTCAATGGCAAGGCTTGATACAGTGAAAAACATTACTGGGTTGACTGAATGGTATGGTAAAAACAGGAAGCTGAGAAGTTTAGTAAACCTTGTGGTGGTCGCTGGATTCTTTGATCCATCAAAATCAAAGGACAGGGAAGAAATTGCTGAGATAAAAAAGATGCATTCCCTGATAGAAAAATATAAACTCAGGGGGCAAATCAGATGGATAGCAGCTCAAACCGATCGCTACCGCAATGGAGAGCTATACCGGTGCATTGCTGATACAAAAGGAGCTTTTGTGCAGCCTGCACTTTATGAGGGTTTTGGCCTAACAGTCATTGAGGCAATGAACTGTGGACTGCCTACTTTTGCAACAAACCAAGGTGGCCCAGCCGAGATAATTGTCGACGGAGTCTCCGGCTTCCACATGGATCCGAACAATGGAGACGAATCAAGCAAAAAGATTGTTGCTTTCTTTGAGAAATGCAAGTCAGATGGTGGATATTGGAACAAGATGTCAGAAGCTGGTCTTCAGCGAATATATGAATGCTACACTTGGAACATATATGCAAAGAAGGCTCTGAATATGGGATCAATTTATGGATTTTGGAGGCAGTTAACCAAGGACCAAAAACAAGCCAAGATCAGATACATTGAAATACTTTACTCTCTCTTGCTTAGGAAATTGGTGAAGAACATTTCAATCCCTACTGAAGAATCCTTGCCAGCTCCAACCACCACAACTCCACCACAGCAGCCGACGCCGGAGCTCCGATCCCGGAGACCAACTGCCACTCAGTCTGAGCCAAGACCAAGGCAAATTATCCACTCATATTATCATTGTTAA 6012 44.28 MPRERDGVVFFEDLPGALYAGCGEHYRVSFQKQVKPALFRLPARQLRKKRTDAGGESSESQDGGGRGSQRSAERRDGPQQHGGSGYQGGRGWGSQGGRGGQGSGGRGRGTSQHQHYGGPPDYQGRGRGGGGPYQHVARSNYGGGNRGGMGGGGIGGGPSSGGPSRPPVPELHQATSVYQGGMTQPASSVASSSSHPSSDTSSIDQQFQQVSIQQESSQSQAIQPAPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRHNYYYTPLYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYQNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRHFLLSLIYCLVVKKTLFYIIFICCLFDVYLKIISCRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSEAAAGRGGVGARSTRAPGLNAAVRPLPALKENVKRITRQKQGNHHFIIKLKTVSEDNKKEGCVIIAMEAASLMRLDTPISDSLNNALRRSHNSMKKCFARFVENGKRLMKCQDLMKDVEITIEDKRERNHVLEGFLGYILSNTQEAAVVPPNIALAVRPSPGFWEFVKVNATSLEVGDLTVSEANDENALEIDFRAIEFSAPRLSLPSSIGNGVNLISKFISSRFGEDKQNVKELVDYLLALHHRGQSLMINKKLNTVSKLQSALFAAQVYLSSLPKDTPYEEFKHKMKGWGFEKGWGSTSERARETMLILSEVLQAPDPAKLELLFSRLPTTLNIVIFSPHGYFGQAGVLGLPDTGGQIVYILDQVRALEEELLHRIELQGLQAKPQILVVTRLIPDARGTKCNVELEPIENTKHSHILRVPFFTQNGVLHQWVSRFDDATSKILEVMDCKPDLVIGNYTDGNLVASLMAKKLGITQGTIAHALEKTKYEDSDAKWKELDPKYHFSCQFTADLISMNATDFIITSTYQEISGSKTRPGQYESHEAFTMPGLYRVVSGINVFDPKFNIAAPGADQSVYFPFTEKSKRLTNLHPDIEELLYSRENNDEHIGYLADKKKPIIFSMARLDTVKNITGLTEWYGKNRKLRSLVNLVVVAGFFDPSKSKDREEIAEIKKMHSLIEKYKLRGQIRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEGFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHMDPNNGDESSKKIVAFFEKCKSDGGYWNKMSEAGLQRIYECYTWNIYAKKALNMGSIYGFWRQLTKDQKQAKIRYIEILYSLLLRKLVKNISIPTEESLPAPTTTTPPQQPTPELRSRRPTATQSEPRPRQIIHSYYHC 2003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27345092 27360014 + ClCG04G012520.2 Cla04g01223 271451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01223 2003 MobiDBLite consensus disorder prediction 1961 1991 - -
Cla04g01223 2003 Gene3D - 808 1144 IPR036397 GO:0003676
Cla04g01223 2003 SMART DUF1785_2 396 448 IPR014811 -
Cla04g01223 2003 Gene3D - 1185 1309 - -
Cla04g01223 2003 Pfam N-terminal domain of argonaute 246 379 IPR032474 -
Cla04g01223 2003 CDD Piwi_ago-like 607 1095 IPR045246 -
Cla04g01223 2003 Pfam Mid domain of argonaute 646 720 IPR032473 -
Cla04g01223 2003 Gene3D Glycogen Phosphorylase B; 1444 1951 - -
Cla04g01223 2003 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1459 1917 - -
Cla04g01223 2003 Gene3D - 1310 1439 - -
Cla04g01223 2003 MobiDBLite consensus disorder prediction 1974 1991 - -
Cla04g01223 2003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 129 909 - -
Cla04g01223 2003 TIGRFAM sucr_synth: sucrose synthase 1199 1955 IPR012820 GO:0005985|GO:0016157
Cla04g01223 2003 SUPERFAMILY PAZ domain 443 603 IPR036085 GO:0005515
Cla04g01223 2003 Pfam PAZ domain 453 578 IPR003100 GO:0005515
Cla04g01223 2003 ProSiteProfiles Piwi domain profile. 739 1096 IPR003165 GO:0003676
Cla04g01223 2003 CDD PAZ_argonaute_like 448 562 - -
Cla04g01223 2003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 939 1141 - -
Cla04g01223 2003 SUPERFAMILY Ribonuclease H-like 734 908 IPR012337 -
Cla04g01223 2003 Pfam Argonaute linker 1 domain 398 447 IPR014811 -
Cla04g01223 2003 Pfam Glycosyl transferases group 1 1716 1882 IPR001296 GO:0016757
Cla04g01223 2003 Gene3D Glycogen Phosphorylase B; 1681 1908 - -
Cla04g01223 2003 MobiDBLite consensus disorder prediction 41 237 - -
Cla04g01223 2003 ProSiteProfiles PAZ domain profile. 449 563 IPR003100 GO:0005515
Cla04g01223 2003 Pfam Glycine-rich region of argonaut 117 227 IPR024357 -
Cla04g01223 2003 Pfam Piwi domain 740 908 IPR003165 GO:0003676
Cla04g01223 2003 Pfam Piwi domain 939 1095 IPR003165 GO:0003676
Cla04g01223 2003 MobiDBLite consensus disorder prediction 176 227 - -
Cla04g01223 2003 Gene3D - 627 802 - -
Cla04g01223 2003 Gene3D paz domain 442 567 - -
Cla04g01223 2003 PANTHER PROTEIN ARGONAUTE 1A 129 909 - -
Cla04g01223 2003 PANTHER PROTEIN ARGONAUTE 1A 939 1141 - -
Cla04g01223 2003 MobiDBLite consensus disorder prediction 1100 1121 - -
Cla04g01223 2003 SUPERFAMILY Ribonuclease H-like 939 1096 IPR012337 -
Cla04g01223 2003 SMART PAZ_2_a_3 453 585 IPR003100 GO:0005515
Cla04g01223 2003 Pfam Argonaute linker 2 domain 589 635 IPR032472 -
Cla04g01223 2003 SMART Piwi_a_2 739 1096 IPR003165 GO:0003676
Cla04g01223 2003 Pfam Sucrose synthase 1186 1707 IPR000368 GO:0005985|GO:0016157
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00833 Cla-Chr1:10100519 Cla04g01223 Cla-Chr4:27345092 0 dispersed
Cla01g01387 Cla-Chr1:28220177 Cla04g01223 Cla-Chr4:27345092 0 dispersed
Cla04g01223 Cla-Chr4:27345092 Cla05g00502 Cla-Chr5:4625377 0 dispersed
Cla06g01153 Cla-Chr6:24558144 Cla04g01223 Cla-Chr4:27345092 2.96E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01223 K11593 - csv:101212130 1827.76