Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01230 ATGGCTCAGACGGCAAATCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGCGATCTGGATTTTCTTCTACCGCCCAAGAAAATTATCGGTCCAGACGAGAACGGCTTGAAGAAAATTATTGAATATCAGTTCAACGAAGATGGTAATAAGGTCAAGATCACAACCACCACGCGTACTCGCAAGCTCGCCCATGCTCGCCTCAGTAAACACGCCGTTGAGCGCCGATCTTGGGCAAAGTTCGGCGACGCTGTGCACGAAGACGTCGGCAGCCGCCTCACCATGGTCTCCACTGAGGAGATCCTCCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTGTGTCGTACTTGTGGCAAAAAGGGCGATCATTGGACCTCGAGGTGCCCTTACAAAGACTTGGCACCACAAGGTGAGGGATTGGATAAGACTTCAGCACCAGAGGCTACAGCTGCTGCACCCGGTGCAACTAAGGGAACATATGTTCCTCCAGGTATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGTAGGAACGATGAAAACTCCGTTCGTGTCACCAACCTCTCGGAGGACACAAGAGAGCCTGACCTTCTCGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGACCAGAAGACGGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCTACTTAA 867 50.75 MAQTANRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGLKKIIEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKTSAPEATAAAPGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27402168 27404158 + ClCG04G012610.1 Cla04g01230 271458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01230 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Cla04g01230 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cla04g01230 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Cla04g01230 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cla04g01230 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Cla04g01230 288 Gene3D - 164 288 IPR012677 -
Cla04g01230 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cla04g01230 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Cla04g01230 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cla04g01230 288 CDD eIF3G 37 156 IPR024675 -
Cla04g01230 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cla04g01230 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Cla04g01230 288 MobiDBLite consensus disorder prediction 163 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01230 Cla-Chr4:27402168 Cla05g01264 Cla-Chr5:14961372 0 dispersed
Cla04g01230 Cla-Chr4:27402168 Cla11g00125 Cla-Chr11:1608079 3.81E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01230 K03248 - csv:101212619 545.043