Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01234 ATGTTCAAAGTCTTCGCAGTCGCTGCGTTGCCTTGGTCAGCTCTTTTACTATTACAATCTCCTCTTCCCCTCGCAATGCAGTTCTACACTTCTCCAACTGTTCACACCTTCACTTTCTCCTCCTCTCTGCTGCCATGGAATTCGCTTTGGAATCCAGTTCTAAGTAGGCGTCCGCCTCTCTCTCACTCTCAGGCGAGGGCGCGCCACACACTTACGCGCCTTAATTCCTTCAGCGCACTCTGTCTGATATTTTCAGCTTTCGATAATTCCTTCTTTACACTGTCTGATATATCCAGTAGTGTTCATTTCCGAACTCTGCGCTGGATTTTCTTTTTGTCTAGATACTTAGGCATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACCGATCCACCAATGTTTGATGAGCAAGTGGATTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCATCACTATCAATTCCAGCAACTTCTTCTGGCATGTATGGTAGTGAAGCAATTCTTGTTGGTCATACTGGTCCCCTACGAATTGAAAGAAGTTCATTCATGGTGAGTGGTTCAAAATATACCGGCAGTAAGCCTGAAAAACTTTCACAGTCAAAGCCAGGAGTGACTGAAAGCAAAACGGCAGAGCTGTTGGCAGAAAAAATCCCTTCCTTCAAGGCGACAGATGAGTCTGATTGGTCCATTCATAACTATGCTGGTAGAAATGAACACTTAATAAGGTCTGGCCAGCTGGGATTGTGCAATGATCCTTTCTGTATTACTTGCCCAACATATAATTTCAAAGCATCACAACAGAAAAGCTCAAGAATTTCAGGCATATTTGACGCCAAGTTTCATAACGATCTCTATGGAGGAGGGAAAGGTTGGGCGGGAAGCTTTCAGTCATTCTGGTGCTTCTTGCTTCCATATATTCCAGGAGTAATGAATCCTCATGCAAAAGTTGTTCAGCAGTGGAACAAGTTTTTTGTCATTTCTTGCTTAGTGGCAATCTTCTTGGACCCATTATTTTTCTTCTTGCTGTCTGTCCAATATAAGAATAAGTGCATCGTTATTGATTGGTCTTTGACCACAGCATTGGTGGTTTTCCGGAGCCTGACTGACTTTATCTATTTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTACGTGGCACCAGAATCCAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCTATGAATTACATTAAAGGAAAATTTTTTGTAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGGTACGGCCCCTATCTCCTGGCTCACATGGTCAGATACGTTTGAGGTCACCTATATTGTGCACTACAATAATCAACTATCTCCTGAAATCTCAAGTTCTTTTAGAATATCCTGTTACTGTGCAATATATTCCCAGACTCTATAGATTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTGACCTTTATGTTGGCTGGTCATGTTGTTGGGTCTTTCTGGTATCTCCTTGGGCTTCAGGGGGTGAATCGATGTTTTCGAGAGGCCTGCACTAACACTGGAAATGAGAGCTGCTTGGAATATATAGATTGTGGGCATGGGAATGAAGCTGGGAGTCAGATTCAGGATCCACAGCGGGATTCATGGAAAAATAATGAGAATGCTACGGCATGTTTTGCCAAAGAAGGTTTCAATTATGGAATCTATCTTCAGGCTGTAAACCTTACTACAGAAAATAATATAATCACGAGATATACTTACTCCTTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTTACTATGGCTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGCACATCCAGTTCATCCTGGCTCCATTTGCTCTTTATCTTGATTCCATATGGATATCTGGTTCATCTCGGGTTAACATCCAAATGGAGCATGAGCACGATCACGATCATGGATCATACTTTCTTTTATCAAGGAGGTTAGAAATGTCACTAAGACGTCGTGATGTTGAGCAATGGATGGAGCATCGTCGCTTACCAGAGAATTTAAGAAGGCAAGTACGACAGGCTGAAAGATACAATTGGGCTTCTACAAGAGGTGTAAATGAAGAGAGGATTTTCGAAAATTTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTTAACAAGGTTCGCATTTTTGCACTAATGGACTATGAGCCTATTTTAGACGCAATACGTGAGAGACTGCGTCAGAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATCATTGAGAAGATGGTTTTCATCGTACGTGGGAAAATGGAGAGCCGTGTAGATGGAAATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAGCATGGTGTCTTGAGCATTCCTCCATAAACAAAGATATGAAGCGGCATCAAGTTCCAGCACCGAGATTGGTCAGCAATCGGACAGTAAAATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGTTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATAAGGTACGAATCACCCTACTGGAGGTACCTAGCTGCAACGCGCATTCAAGTAGCTTGGAGATACAGGAAAAGACGTCTATCTCGAGTTCAAACATCTCAATCTGACTAA 2841 42.63 MFKVFAVAALPWSALLLLQSPLPLAMQFYTSPTVHTFTFSSSLLPWNSLWNPVLSRRPPLSHSQARARHTLTRLNSFSALCLIFSAFDNSFFTLSDISSSVHFRTLRWIFFLSRYLGMAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPATSSGMYGSEAILVGHTGPLRIERSSFMVSGSKYTGSKPEKLSQSKPGVTESKTAELLAEKIPSFKATDESDWSIHNYAGRNEHLIRSGQLGLCNDPFCITCPTYNFKASQQKSSRISGIFDAKFHNDLYGGGKGWAGSFQSFWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQYKNKCIVIDWSLTTALVVFRSLTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYIKGKFFVDLLVVLPLPQVRPLSPGSHGQIRLRSPILCTTIINYLLKSQVLLEYPVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHVVGSFWYLLGLQGVNRCFREACTNTGNESCLEYIDCGHGNEAGSQIQDPQRDSWKNNENATACFAKEGFNYGIYLQAVNLTTENNIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRHIQFILAPFALYLDSIWISGSSRVNIQMEHEHDHDHGSYFLLSRRLEMSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLAWCLEHSSINKDMKRHQVPAPRLVSNRTVKCLSNVEAFSLRVADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAATRIQVAWRYRKRRLSRVQTSQSD 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27437952 27460492 + ClCG04G012650.1 Cla04g01234 271462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01234 946 SUPERFAMILY cAMP-binding domain-like 705 902 IPR018490 -
Cla04g01234 946 SUPERFAMILY Voltage-gated potassium channels 320 655 - -
Cla04g01234 946 Gene3D - 327 657 - -
Cla04g01234 946 Gene3D Helix hairpin bin 703 768 - -
Cla04g01234 946 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 702 942 - -
Cla04g01234 946 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 123 662 - -
Cla04g01234 946 ProSiteProfiles cAMP/cGMP binding motif profile. 789 846 IPR000595 -
Cla04g01234 946 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 702 942 - -
Cla04g01234 946 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 123 662 - -
Cla04g01234 946 Gene3D Jelly Rolls 774 900 IPR014710 -
Cla04g01234 946 Pfam Ion transport protein 325 657 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla04g01234 946 CDD CAP_ED 776 894 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01234 Cla-Chr4:27437952 Cla06g01285 Cla-Chr6:26208231 4.23E-123 dispersed
Cla04g01234 Cla-Chr4:27437952 Cla10g01367 Cla-Chr10:28734213 2.42E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01234 K05391 - csv:101215903 1349.34