Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01235 ATGGACTTTGGTGGTGGCTCTGGTTGGGACAACGATTCCTCCTCCGACCCTCAACGCAGGAAGAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGGCTCGAGGCAATGTTTAAAGAATGCCCCCACCCGGATGAGAAGCAGAGGTTGCAGTTAAGTAGAGAGTTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCACAACATGAAAGGGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTCATTTGTCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCTTACTTCGACGAGCACAAACTTCGAATCGAAAACTCCCATTTGAAAGAAGAGCTTGATAGATTATCTAGCATTGCAGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCTTCTCATTTTTCCTCCTTAGAGCTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGCCCTTCTCTTGATCTTGATTTGCTTCCTGCAAGTTCTACAAGTGTTACCAGTTTGCCATACCTCCACCCAATTCACCTCTCCTCTGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGCTACTCAGGCTTTCTCAAACTAATGAGCCATTTTGGATGAAATCACCAACTGATGGTCGTGACCTTCTTGACCTTGAAACCTATGAACAGGCTTTTCCAAGACCCAACACTCCCTTGAAGAATCTCCATTTTCGAACCGAAGCATCTAGAGATTCAGGCGTCGTGATCATGAGTAGTGCAGCATTGGTTGACATTTTTATGGACTCGAACAAATGGACAGAGTTATTTCCCACAATTGTCTCAATTGCAAGAACAATTGAAGTTATATCGTCCGGAATGTTGGGAAGTCAGAATGGCTCCTTGCAACTGATGTACCAAGAATTGCAGCTACTCTCCCCATTGGTTCCAACTCGTCATTTTTACGTCCTCCGATATTGTCAACAAATTGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTACAATATCCCCAGAGAAAACCAAATAGTTTCTCATTCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATACAGGACATGCCTAATGGTTACTCCAAGGTTTTGCCACTTTATTTTTGTTCTGCATTTTTCTTTATGATTGAAACTTCATACTTTATGTTCCTAAATTTCTTCTCATTGGACAATGCACACCGGAAACAGGTTACTTGGATTGAGCATGTGGAAGTGGAAGATAGAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGGCTGAAAGGTTTGCTTGTTTAATGGTGACCGGTAGTTCCAATCAGGATCTTAGCGGAGGTAACGTCCGATCTAAGGTTGATTTTGCTGTTTTACAATCAAGTACATTGTTTTTGGTTACTAATGTCGTAAAGGATTGTTATATTCTCGTAGTAATTCCATCGCCAGAAGGAAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTTTGTGCTAGTATCAGCACATCCCATGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCACAGATTCTGGCCAACCTAATGGTGTGGTTCTTAGTGCAGCTACAACCATTTGGCTCCCAGTTTACCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGGTATTTGTGAATTCAAAATTTCAGATTATTGGTCAAACACTTTATGATGACAATGACTACATTAACTGTGTAAGTTTAATGTTGCATCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATATCCAACGGATCTCATCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGCAATGAGTGGAGAGGACCCATCAAGTATCCCTTTGCTGCCCTCAGGATTCACAATTTTACCAGACGGTCGACGGGACCAAGGAGAGGGCACATCGAGCAGCTCAGATGTGAACAACAGATCAGGAGGCTCTCTGGTGACGGTTGCATTTCAGATACTAGTGAGCAGCTTGCCGTCTGGGAAGCTGAACTTGGAGTCAGTCACAACAGTTAATAACCTTATCAGCACCACTGTCCACCAAATCAAGACAGCCTTAAATTGTCATAGTTCTTGA 2403 44.44 MDFGGGSGWDNDSSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENSHLKEELDRLSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLPASSTSVTSLPYLHPIHLSSVDKSLMTEIATNAMAELLRLSQTNEPFWMKSPTDGRDLLDLETYEQAFPRPNTPLKNLHFRTEASRDSGVVIMSSAALVDIFMDSNKWTELFPTIVSIARTIEVISSGMLGSQNGSLQLMYQELQLLSPLVPTRHFYVLRYCQQIEQGVWAVVDVSYNIPRENQIVSHSQCHRFPSGCLIQDMPNGYSKVLPLYFCSAFFFMIETSYFMFLNFFSLDNAHRKQVTWIEHVEVEDRGSTHWLFRDLIHSGLAFGAERWLATLQRMAERFACLMVTGSSNQDLSGGNVRSKVDFAVLQSSTLFLVTNVVKDCYILVVIPSPEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDSGQPNGVVLSAATTIWLPVYPQTIFNFFKNDRTRSQVFVNSKFQIIGQTLYDDNDYINCVSLMLHQWDVLSDGNPVQEVAHISNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGTSSSSDVNNRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHSS 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27472728 27475804 + ClCG04G012660.1 Cla04g01235 271463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 432 492 - -
Cla04g01235 800 ProSiteProfiles START domain profile. 209 480 IPR002913 GO:0008289
Cla04g01235 800 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Cla04g01235 800 SMART START_1 218 477 IPR002913 GO:0008289
Cla04g01235 800 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Cla04g01235 800 Gene3D - 9 94 - -
Cla04g01235 800 SUPERFAMILY Bet v1-like 529 792 - -
Cla04g01235 800 CDD homeodomain 20 79 IPR001356 GO:0003677
Cla04g01235 800 Pfam START domain 433 476 IPR002913 GO:0008289
Cla04g01235 800 Pfam START domain 219 400 IPR002913 GO:0008289
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 643 798 - -
Cla04g01235 800 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 643 798 IPR042160 -
Cla04g01235 800 MobiDBLite consensus disorder prediction 1 26 - -
Cla04g01235 800 SUPERFAMILY Bet v1-like 212 478 - -
Cla04g01235 800 MobiDBLite consensus disorder prediction 731 750 - -
Cla04g01235 800 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Cla04g01235 800 SMART HOX_1 19 82 IPR001356 GO:0003677
Cla04g01235 800 CDD START_ArGLABRA2_like 213 476 - -
Cla04g01235 800 Gene3D - 217 477 IPR023393 -
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 524 620 - -
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 401 - -
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 524 620 IPR042160 -
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 432 492 IPR042160 -
Cla04g01235 800 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 401 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01235 Cla-Chr4:27472728 Cla05g01141 Cla-Chr5:12124146 0 dispersed
Cla04g01235 Cla-Chr4:27472728 Cla02g00833 Cla-Chr2:11320437 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60959 PF01852 START 6.60E-34 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01235 K09338 - csv:101215660 1314.29