Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01237 ATGGTTTTGACGACAGTTGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGTTCTCCTCCTCCCAAGTTCAAACTAGGGGAGCAATCTATTCCAAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGGACTCCCAGGCTGAACTTGGCTTCTTTTGTAACAACTTGGATGGAGCCAGAGTGTGATAACCTTATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGAAAATCTCAAGGCAAACCCTACGATAAACCCAACATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTATTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTTGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTTCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTTACTCTCAACTTCTCAAAAGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTCATACGGCTTGGCTTTGAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAACACACCGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGACGCTCAGCACATAGCGGTGCTGCGCGTGGTGATTAGAGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATCAACAGAGTCTTGAAGGAAGTCGAGGCACTACCAACTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGCGTTGAAGATGGAGAACTGGTGCTTGCTAGTGCACTGCTTAATTCAACTCTGCTTGGCTTGCTCTTGTTGTTGCTGTTGCTTTTGATTGTCTTTCAGTTTGCTTCCTTGCTGGTGCATCGCGTCGTCAGCAACTTCTCTGCTCAAGCCTCAAGCGATTCTATTGTCACACTGAAGAATGGACGCATTAACTCTGAGGAGAAAGGCTGCGAAGATGATGCTATAGATCTTGTTCTCGATAATCTCCATGATGAATCTTTGAAATCTTCAATATTAGACAAGGATGCGGTGCATCGGGTTATCAGCATTATGCTTGCATCTGATGAAGTGGGAGAAGAAAGTCCCACTACCTCTACCAGTACACATGCTCTTTGCATCATCAACGCTTTTGATATCTCCAAGTTTCGTTATGATCCCATCAAAAAGATCTTCCATCTACATACAGGAAGCTTTCCAATTCATGGGGATGCTCCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTCTGCTTTCCCAGAGGCTCTCCCGAGATCAGCATTTCTCCAAACCCGCTTTTGACACTGGCATGTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAGTGATCTCTCAAATGGAGGATGGCCACTTTTACTTGGAGGACCTTACTGCATCTATGACATGCACTGCAGTTTTCATTAATAATAAGCACAAGATAACTACAGGTCTTTTTACAGAGAACACCATTGTTGTAGCAGAAGGAGAGATGCTTGTGGAGGGTATTTTTCAGGTTGTTACATGTGGATTTCCTCCACTAGAGGAGAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTGCTCTACCAAAAGAGGAGACTCTCAGGCTTGCAGATCTGGAGAAGAAAGCTTTTAATGATATGTTTGTCATACTTTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTGGAAGTGGTTCCTTCCTTATTTGTTTTGATGGGAAATTTTTGTTCCCGTCCATGCAATCTTGCCTTTAATTCTTTCTCGAGTCTCAGACTACAGTTTGGTAAGTTAGGAAAAATGATAGCAGCTCATCCAAGATTACAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGACCATCAACCGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAGATGCACGTCCCAAATGCCATTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACCCAGGAAATTGTATTTTTCCGACAAGACCTTCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTCGAGCATCTTGTTGCGACTATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATACCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGTAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGAGGCGTGTGGCCTGGGACGGAGCCCAAGCCACGAGGCTCGGCCTGGGTTCGAGCCTAGATCGAGCGCCGAGGCTGAGGCGGACCCGACCAACATCTCTTCCAATCAAGGCTGCACGTGAGAAGGAGGCCCAAGTGAGATTTGATCCTAGCTTGCTAAGAACTAAGAAACTCATATCTTAA 3246 45.56 MVLTTVADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDINRVLKEVEALPTRVAVKAAEVKAGVEDGELVLASALLNSTLLGLLLLLLLLLIVFQFASLLVHRVVSNFSAQASSDSIVTLKNGRINSEEKGCEDDAIDLVLDNLHDESLKSSILDKDAVHRVISIMLASDEVGEESPTTSTSTHALCIINAFDISKFRYDPIKKIFHLHTGSFPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFYLEDLTASMTCTAVFINNKHKITTGLFTENTIVVAEGEMLVEGIFQVVTCGFPPLEERDKSLKLLAGQDFFGGGALPKEETLRLADLEKKAFNDMFVILSDIWLDSEEAMGKLETILDGFENVEVVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGKLGKMIAAHPRLQEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSALRRVAWDGAQATRLGLGSSLDRAPRLRRTRPTSLPIKAAREKEAQVRFDPSLLRTKKLIS 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27487052 27500469 + ClCG04G012680.2 Cla04g01237 271465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01237 1081 Gene3D - 65 359 IPR015421 GO:0003824
Cla04g01237 1081 Pfam DNA polymerase alpha/epsilon subunit B 780 986 IPR007185 GO:0003677|GO:0006260
Cla04g01237 1081 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cla04g01237 1081 Gene3D - 790 1022 - -
Cla04g01237 1081 Gene3D - 1 64 - -
Cla04g01237 1081 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 443 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cla04g01237 1081 PANTHER GLUTAMATE DECARBOXYLASE 1 459 - -
Cla04g01237 1081 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cla04g01237 1081 PANTHER GLUTAMATE DECARBOXYLASE 1 459 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cla04g01237 1081 CDD DOPA_deC_like 58 438 - -
Cla04g01237 1081 Gene3D - 360 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00847 Cla-Chr1:10324719 Cla04g01237 Cla-Chr4:27487052 0 dispersed
Cla04g01237 Cla-Chr4:27487052 Cla06g00190 Cla-Chr6:2199208 1.89E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01237 - - csv:101207444 913.679