Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01243 ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGCCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAATAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACGAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGATGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTATGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACGACGACGACAACGACAACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA 1356 51.33 MIGNTATSASPVLPSSEPYSCLENGNNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27554467 27556476 + ClCG04G012740.1 Cla04g01243 271471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01243 451 MobiDBLite consensus disorder prediction 202 221 - -
Cla04g01243 451 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Cla04g01243 451 MobiDBLite consensus disorder prediction 1 48 - -
Cla04g01243 451 Gene3D Classic Zinc Finger 39 101 - -
Cla04g01243 451 Coils Coil 318 380 - -
Cla04g01243 451 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cla04g01243 451 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 438 - -
Cla04g01243 451 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cla04g01243 451 SMART c2h2final6 102 132 IPR013087 -
Cla04g01243 451 SMART c2h2final6 61 83 IPR013087 -
Cla04g01243 451 SMART c2h2final6 138 165 IPR013087 -
Cla04g01243 451 PANTHER OS03G0310200 PROTEIN 13 438 IPR039288 GO:0009630
Cla04g01243 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cla04g01243 451 Gene3D Classic Zinc Finger 117 187 - -
Cla04g01243 451 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01024 Cla-Chr4:25367873 Cla04g01243 Cla-Chr4:27554467 5.74E-172 dispersed
Cla04g01243 Cla-Chr4:27554467 Cla01g01891 Cla-Chr1:33706688 1.11E-73 dispersed
Cla04g01243 Cla-Chr4:27554467 Cla08g01505 Cla-Chr8:27861370 1.31E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60961 PF00096 zf-C2H2 0.0043 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01243 K25871 - csv:101209426 743.421