Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01253 ATGGTATTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAGTCCGATTCTTCCAGCCCTGATGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCACCCATCAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATCCCAGCAGCAGCAGCTTCAGAGGTACCGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCAAGCTCCATTGCCGATCGAGACGCCCTCGAAGTCTGACCCAATTTCCGGCTTCAACTTGGGGCCGAAGGCCAAGAAGTCGGCCGATGTGAAAGACGTGGCGTCATCGGTTTCACCTATTCTGGCATCATCCCTTGGGCTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTCTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCTAGCAATCTTTCCAGGAATTGCGGCGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTAGTGGGGGGAAGAGAGAGGCGGCGAGTCAGAAAAGATTGGGTTTTCAGGAAAATGTTAAAAGCTATATTCGCGATGCTAGCAATTCCGACAATATGCCAATTGGTAATGCACCATCTACTGAGCGGAGTCCAAATTTGTTAGGACAGCCTCGAGTACAGAATGTCGCTTCATCCAATGAAGCTGGATGCTATGAATCATCATGGGGATGTTCTGACGGATTAAGAAATTTAGATTTCTGTACGCCAGAGTCCTCTTATGATTGTGAAAATCCCAAGGAGTCTGAATCTCCGCGCTTTCAAGCTATACTGCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCCGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGCGTACGACCTTTCCCACTTTGGAAGTCACGCCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAAAAAAATGCCGATGCTCATCCAGAGTGGCAAGAGACAATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCTATGTCATCCCCTGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACTCGAATGTTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAGGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAGCTTCGTCAGTCGAGAAATCTGCATTCTGCTGATAAACGAATTGCTCCAGCTATGGTAAGGGAAGTGAAAAGTTCTAAGACAACTTCTTCCAGGAAGTCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTCTCAACATCTCCCGATGATACTTCGAAGAACTTGGTATCTCCTACTGGCAGAGACCGGTGGGCTTCTTGGAAAAGATTGCCTTCTCCAGCAGCAAAAAGTGTGAAAGAACCTACTTTGAAGGATCAGGGTGATAATAAGAAATTTAAATCTTTGAACATGTCAAAAATCAGGATGGGTGTTTCTGAAGCTGATTTGCCTGCTGCTAAGGTTTCTGAGCTTCCTCCGCCCAGAGATTCTCATGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAAGAAGAAATTCCAACTGCAAATGTGGAAGATCATTCAAGAATTTGCGCAGTTGCTGATCGATGTGATCAGAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTTTAGAGAAAATGATCGAGTCTTTTACGCAAAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCTAATTCTAGCGTGACTGAAGAATCAGATATTTCCCCAAAACACAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTTATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCCTTATTAACACCAAGGACCAGTCAGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACATGATGATCTTACGCAGATCAGTGATCTTGCAGATATTGCACGCTATTCAGCAAATACACCTCTGGGTGATGATTGCTCGATGCAATACCTGCTAACATGCCTTGAGGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCGCTGACAGTTGACACTTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAGTATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAGCAAGTACTGTTATTGATGAAGATACACCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCAATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTTGCAATAAAGTCTGAGGCTGTCAGATGGGATTCCAAGGAGGAGAACGCCTTTTCCTTACCTTTTCCTGAGGAGGAGAGAGAGGTATCATTAGAGTCACTTTTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGCAGGTGTCTTCAACTTTAGAAACAGAAGGGGTTCCATGCTATCAATCTGAAATCATCCTATCTGCACCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGACTTCTGGGATTTGGATGAATGTGGTTACTGTTCGAGAGTTAAGTCATTGTGCTTTAGGGTTTTATGGTGGGCATTGGAGCCCTAGTTTGAGATTCAATTTTAGCACATGGTTACGATCGGGTGATTATTGTAGTTTAGTTAGCCATGACCAAACAATTCGGATTTTTTCTCCCTGGAAAAGTGTCAATTCTCTTGAAGGAGGTTGTTCTTGGCATGAAATTGCTCGACCTCAAAATGTTGTGGCTGTGGCCACTGAAGATCACCTTGTGGGTGTTCAAATCTTGAGTGCTAATATGTCGGCTCTTGGTCTTTCCCAGAAACCTATTTATGTTCACTCTGCTTTTAAGACACCAGACAGGAGTGGAAATGCAGTTACCCTTGAAACCATTCCCGATGCAGTTCTTTTCGTTCTTACTGAACCCTCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCATGAAGTCGTGATCAGAAGGGGAAGCTTGTTGCATCATCTTAGTACAGGCTCTGATGAAATCCACCATGAACATATATCAAGGCTGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCACATGGTCATGAGTTTGTAACCGGCTCTAGAGATAAGACTGTGAAGATATGGGCTGTGACGGCTGAATCTTCAGTTAAGCCGCTAACAACTCTGTCACAGTTCAAATCTAGTGTCTCCGTTTTATTGTGGGTCGGTATTGATCCCAAGTGCAATGGATTCCTTGCAGTTGGAATGGAAAATGGTCTCATTGAGTTGTGGAGTTTGTCTACCAAAAGAACAGATAATGTTTACTCAAGTGTAGTTGCTTTGGTTGCTAATGCCTCAATCCATTTGTTTGCCATGTTTCCTCGGTCAACCCTTTGGCATGGAAGTCACCGGAGAAGAGTGGTGAAGAGTGCAGGAAGTTGCAACTTGCATCCTGTGGCGCTAACCACTATGTTAGAGTGTTTGAGGTAA 3987 43.87 MVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPIRSDKKKNKSAAKDEPQISNPSSSSFRGTVLKDASRSKDWKRKDSQAPLPIETPSKSDPISGFNLGPKAKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSSGGKREAASQKRLGFQENVKSYIRDASNSDNMPIGNAPSTERSPNLLGQPRVQNVASSNEAGCYESSWGCSDGLRNLDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNADAHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIAPAMVREVKSSKTTSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRWASWKRLPSPAAKSVKEPTLKDQGDNKKFKSLNMSKIRMGVSEADLPAAKVSELPPPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSVTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARYSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKSEAVRWDSKEENAFSLPFPEEEREVSLESLLIGHEDWVYSVQWQVSSTLETEGVPCYQSEIILSAPMDKTMMIWKPEKTSGIWMNVVTVRELSHCALGFYGGHWSPSLRFNFSTWLRSGDYCSLVSHDQTIRIFSPWKSVNSLEGGCSWHEIARPQNVVAVATEDHLVGVQILSANMSALGLSQKPIYVHSAFKTPDRSGNAVTLETIPDAVLFVLTEPSIEDQLAWHTLWPESHKLYGHGNEHEVVIRRGSLLHHLSTGSDEIHHEHISRLEAHRRIIWSCSWNPHGHEFVTGSRDKTVKIWAVTAESSVKPLTTLSQFKSSVSVLLWVGIDPKCNGFLAVGMENGLIELWSLSTKRTDNVYSSVVALVANASIHLFAMFPRSTLWHGSHRRRVVKSAGSCNLHPVALTTMLECLR 1328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27661222 27675920 + ClCG04G012840.1 Cla04g01253 271481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01253 1328 Coils Coil 636 656 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 46 63 - -
Cla04g01253 1328 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 22 911 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 722 744 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 655 678 - -
Cla04g01253 1328 SUPERFAMILY Protein kinase-like (PK-like) 866 916 IPR011009 -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 64 78 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 654 688 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 196 222 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 9 30 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 490 510 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 148 181 - -
Cla04g01253 1328 Pfam WD domain, G-beta repeat 1181 1214 IPR001680 GO:0005515
Cla04g01253 1328 ProSiteProfiles Trp-Asp (WD) repeats profile. 1183 1224 IPR001680 GO:0005515
Cla04g01253 1328 MobiDBLite consensus disorder prediction 1 222 - -
Cla04g01253 1328 Coils Coil 315 335 - -
Cla04g01253 1328 SUPERFAMILY WD40 repeat-like 937 1270 IPR036322 GO:0005515
Cla04g01253 1328 Gene3D - 926 1055 IPR015943 GO:0005515
Cla04g01253 1328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1183 1214 - -
Cla04g01253 1328 Gene3D - 1152 1312 IPR015943 GO:0005515
Cla04g01253 1328 Gene3D Phosphorylase Kinase; domain 1 866 914 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 462 477 - -
Cla04g01253 1328 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 911 - -
Cla04g01253 1328 MobiDBLite consensus disorder prediction 532 546 - -
Cla04g01253 1328 SMART WD40_4 935 986 IPR001680 GO:0005515
Cla04g01253 1328 SMART WD40_4 1221 1264 IPR001680 GO:0005515
Cla04g01253 1328 SMART WD40_4 1176 1215 IPR001680 GO:0005515
Cla04g01253 1328 MobiDBLite consensus disorder prediction 452 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00509 Cla-Chr1:5514895 Cla04g01253 Cla-Chr4:27661222 4.23E-179 dispersed
Cla04g01253 Cla-Chr4:27661222 Cla05g02273 Cla-Chr5:34378248 1.78E-136 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01253 - - csv:101214945 1642.48