Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01254 ATGCTTACCAAACCACCTTTTTTTGCCCAATTGCATCAAAGACCAAACTTCTCTAGTAAGCAAAAGGTTTTGAAGAAAGCTGATATGATTCGGAAGAATGCCGTTGAAAGTATTTTGGCAGAACGTGATATTTTAATTTCTGTGCGCAACCCTTTTGTGGTCCGCTTCTTCTACTCTTTTACTTGTCGTGACAATTTGTATCTCGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCCTTGTTGAGAAATTTGGGCTGCTTAGATGAAGATGTTGCTCGCGTATATATCGCAGAAGTTCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGGACCACTCTTCTTGGCTATGATGAACCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGTTCTGCTGTTGGCACACCAGATTATTTGGCACCAGAGATACTATTGGGAACTGGACACGGTGAGGCGAGGCGCTCAGGGGCCTTTGTGCCTCTTGTAATGCCTAGGCGAGGCTCTTCAAAGAGGCAGTTGCCTTTTGGCGCCTCGCTGTTTCGAGTTCAGGAGGGTGTGGCTTGTGGGTTTCGTTTTCCTTTTAATACTGATTTTCTGACTTGTGTAAAGACGACAATCAGTGAAAATACCCCGGTGAACCCACAACAGGAAACCCACAATGGCGAACGGAAGATGTACGACAGTAGCGTTGTCTGGCGCAACATACGGATAAACTTCCCAAAGATGCACATCTCAAAGCTTCTTATTGGTGTTTGTTATCAAAGATCTTCGATGGGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCGCCCTTCAATGCAGAGCATCCCCAGGTTTACTTCTTGTTATAG 936 44.66 MLTKPPFFAQLHQRPNFSSKQKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYIAEVLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGEARRSGAFVPLVMPRRGSSKRQLPFGASLFRVQEGVACGFRFPFNTDFLTCVKTTISENTPVNPQQETHNGERKMYDSSVVWRNIRINFPKMHISKLLIGVCYQRSSMGATADWWSVGIILFELIVGIPPFNAEHPQVYFLL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27676085 27691029 + ClCG04G012850.1 Cla04g01254 271482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01254 311 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 100 - -
Cla04g01254 311 PANTHER SERINE/THREONINE-PROTEIN KINASE 278 309 - -
Cla04g01254 311 PANTHER SERINE/THREONINE-PROTEIN KINASE 101 169 - -
Cla04g01254 311 SUPERFAMILY Protein kinase-like (PK-like) 22 170 IPR011009 -
Cla04g01254 311 Gene3D Transferase(Phosphotransferase) domain 1 77 102 - -
Cla04g01254 311 Gene3D Transferase(Phosphotransferase) domain 1 273 307 - -
Cla04g01254 311 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 22 100 - -
Cla04g01254 311 Gene3D Transferase(Phosphotransferase) domain 1 104 172 - -
Cla04g01254 311 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 278 309 - -
Cla04g01254 311 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 101 169 - -
Cla04g01254 311 Gene3D Phosphorylase Kinase; domain 1 22 76 - -
Cla04g01254 311 SMART serkin_6 7 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01254 311 ProSiteProfiles Protein kinase domain profile. 1 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01254 311 SUPERFAMILY Protein kinase-like (PK-like) 273 308 IPR011009 -
Cla04g01254 311 Pfam Protein kinase domain 22 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01254 Cla-Chr4:27676085 Cla06g00671 Cla-Chr6:8500197 7.63E-22 dispersed
Cla04g01254 Cla-Chr4:27676085 Cla05g01850 Cla-Chr5:30387124 2.16E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80519 PF00069 Pkinase 6.30E-11 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01254 - - csv:101214945 275.018