Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla04g01257 | ATGAGGTACACTATGAGGATATGGCTTAGCTGTACAGATCAACCTTCTCCCATGCGAGGAAAGTTTGAGGGCAAAAGTAAAACTGTTTTCCTCTTCCACTATAATTTTCTACTGTTGTCCTTCCCTTTCTGCATGAGGTCACTTGCTTTTGTCTTACAAACTATATTTGATAACATTCTCAACCGTAAGATCCCTTGGCCTCAGATACCTGAAGAGATGAGCCATGATGCTCGAGATTTAATTGATCGATTATTGACAGAAGATCCTAACCAGCGACTTGGAGCTATAGGCGCATCAGAGGTGAAGCAGCATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAACCATTCAGATGGTCATGTCTATCCACACAGTGAACTTGAAGATTCGAGTGATGCCGACAGCTTAAGTGGTGATAGTAGTTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGGTATCTGCTAAAAAATTACTAGGCATGCAGGTTATCATGAATTCCTAG | 654 | 41.44 | MRYTMRIWLSCTDQPSPMRGKFEGKSKTVFLFHYNFLLLSFPFCMRSLAFVLQTIFDNILNRKIPWPQIPEEMSHDARDLIDRLLTEDPNQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDGHVYPHSELEDSSDADSLSGDSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKVSAKKLLGMQVIMNS | 217 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 27694941 | 27703004 | + | ClCG04G012870.2 | Cla04g01257 | 271485 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla04g01257 | 217 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 108 | 211 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
| Cla04g01257 | 217 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 53 | 202 | - | - | |
| Cla04g01257 | 217 | SUPERFAMILY | Protein kinase-like (PK-like) | 52 | 146 | IPR011009 | - | |
| Cla04g01257 | 217 | PANTHER | SERINE/THREONINE PROTEIN KINASE IREH1-RELATED | 53 | 202 | - | - | |
| Cla04g01257 | 217 | MobiDBLite | consensus disorder prediction | 150 | 182 | - | - | |
| Cla04g01257 | 217 | Gene3D | Transferase(Phosphotransferase) domain 1 | 34 | 124 | - | - | |
| Cla04g01257 | 217 | Gene3D | Phosphorylase Kinase; domain 1 | 125 | 140 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g01257 | Cla-Chr4:27694941 | Cla06g00671 | Cla-Chr6:8500197 | 7.51E-12 | dispersed | |
| Cla04g01257 | Cla-Chr4:27694941 | Cla03g01479 | Cla-Chr3:30288766 | 1.95E-09 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla04g01257 | - | - | csv:101214945 | 286.574 |