Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00012 ATGAAGAGGATTCCAGAGTCAAAAGCACTTCCATTATTACTGCCCATAGAGATGCTTCCAGAATCAAATGTACTTCCGGGAAAATTTTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTACGAGACGTGGGAAGATCAATTGGACAAGGATTTCAAGATTCAGAAGTTTCTGCACCTATACGGACGTCAAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAAGCTAAGCGTGATGTCACTTTAAAGGGCAGTAGCTCTTTGATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCTGTGGATATGGATCTGATGAGAACTGTTTATGTACCCATAGGGCAAAATAAGCCTGATCCCGGCTGCTTGATGAAGAGCTTGTCCGTTAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCAGCCAAGAAACCAAGCCCTGCTGTTCCCTCCCCTACAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCTTTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAATGTAAGTCCACTCAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACATATCGAAGTGATGGAATGGTTAGTATTGAAAGGAACTGTGAGAGTACAAAAGGAAGCATTAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGATGATAGTAGTTGGAGTAACATCACAGGAAGTGCTAATAAGCCTCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGATGTGGCGATATTGGTAGTGTTTATCTCTCAGAGCTAAGTGGGACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCAGGGAAACACTTCTCTGAGTATGCTGCAAGGTTCTATGCTGCAGAGGTTTTACTGGCCCTCGAATATCTCCACATGCTTGGAGTTGTCTATAGGGACTTGAAACCGGAGAATGTACTGGTTCGTGATGACGGCCACATAATGCTCTCAGATTTCGACCTTTCACTAAGATGTGCAGTCTCACCCACCCTGATAAAAACCTCATACGATTCTGACCCATCAAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCAGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATCTGGGCTTGCAATCCAGTGCTCTTCCCGAGCTGGTAGCAGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCGTTCAAGGGATCCGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCGGAGTCTCCGGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAGCATCGGCTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCGGAACTGCCTAAGTTTGGGGTAGTTGACACAACAGGGGTTGGGAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2184 46.47 MKRIPESKALPLLLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGFQDSEVSAPIRTSKGKSSFLGQEEAKRDVTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSLSVKGPFLEDLSIRVPAKKPSPAVPSPTESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPLSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDLGLQSSALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 159566 164089 - ClCG05G000115.1 Cla05g00012 271502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00012 727 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Cla05g00012 727 SMART serkin_6 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00012 727 MobiDBLite consensus disorder prediction 269 308 - -
Cla05g00012 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Cla05g00012 727 PANTHER FLIPPASE KINASE 1-RELATED 44 727 - -
Cla05g00012 727 MobiDBLite consensus disorder prediction 191 214 - -
Cla05g00012 727 MobiDBLite consensus disorder prediction 68 120 - -
Cla05g00012 727 MobiDBLite consensus disorder prediction 193 207 - -
Cla05g00012 727 MobiDBLite consensus disorder prediction 269 312 - -
Cla05g00012 727 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00012 727 SUPERFAMILY Protein kinase-like (PK-like) 317 691 IPR011009 -
Cla05g00012 727 Gene3D Transferase(Phosphotransferase) domain 1 419 490 - -
Cla05g00012 727 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00012 727 Pfam Protein kinase domain 564 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00012 727 Gene3D Transferase(Phosphotransferase) domain 1 562 684 - -
Cla05g00012 727 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 44 727 - -
Cla05g00012 727 MobiDBLite consensus disorder prediction 68 86 - -
Cla05g00012 727 CDD STKc_phototropin_like 333 686 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02140 Cla-Chr2:36457569 Cla05g00012 Cla-Chr5:159566 0 dispersed
Cla05g00012 Cla-Chr5:159566 Cla10g01319 Cla-Chr10:28103576 0 dispersed
Cla05g00012 Cla-Chr5:159566 Cla01g01115 Cla-Chr1:18346000 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80520 PF00069 Pkinase 5.30E-36 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00012 - - csv:101217551 1385.16