Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00028 ATGACACATTTCCTTTTCTTTGCCGCCCTTCTCTCTCTTTCACTTACCCCTTCCTTTTGCTTCCATCCCAAATCCTTCAATCTCTCTAACTACCACTCCTATGACTCTGATTGGTCTCCGGCCGTCGCCACCTGGTACGGTCCTCCTAATGGTGCCGGGAGCGATGGAGGTTCGTGTGGATATGGAGAGGCGGTGGAGCAACCACCATTTTCGTCGTTAGTTACGGCGGGAGGCCCTTCTTTGTACAAATCTGGCAAAGCCTGTGGAGCTTGCTATCAGGTGAAGTGCTCCGGAGAAGTCGCGTGCTCAGGGAATCCAGTGACGGTGGTTATAACCGATAGTTGTCCCGGTGGCTCCTGTGCTTCTGACTCCGTCCACTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACTGGCCGGGCTGATGAACTCCGCAGTCTCGGCGTTTTGCATATTCAACATAAAAGGGTGGAATGCAATTATCCGAGAACGTCAATCAGTTTCATCGTGGACTCGGGGTCGAACTCGAACTATTTCGCAGCTCTAATCGAATATGAAGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAACAGGTAGACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTTGACTCCGGCTCAGCCCTTCAAGCTCCCTTCTCCCTCAGGCTCACTGCCCTGGACTCCGGCAAGATCGTGGTCGCAAACAACGTAATTCCCGTCGGGTGGCAGCCAGGGATGACTTATAGATCAGCGGTCAACTTCGATACTTAA 804 52.36 MTHFLFFAALLSLSLTPSFCFHPKSFNLSNYHSYDSDWSPAVATWYGPPNGAGSDGGSCGYGEAVEQPPFSSLVTAGGPSLYKSGKACGACYQVKCSGEVACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRADELRSLGVLHIQHKRVECNYPRTSISFIVDSGSNSNYFAALIEYEDGDGELGSVELKQVDSYSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKIVVANNVIPVGWQPGMTYRSAVNFDT 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 399180 400179 - ClCG05G000240.1 Cla05g00028 271518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00028 267 SUPERFAMILY PHL pollen allergen 167 261 IPR036749 -
Cla05g00028 267 Gene3D - 165 266 IPR036749 -
Cla05g00028 267 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Cla05g00028 267 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Cla05g00028 267 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Cla05g00028 267 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Cla05g00028 267 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Cla05g00028 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Cla05g00028 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 166 IPR007112 -
Cla05g00028 267 PANTHER EXPANSIN-B2-RELATED 4 266 - -
Cla05g00028 267 Pfam Lytic transglycolase 75 151 IPR009009 -
Cla05g00028 267 SUPERFAMILY Barwin-like endoglucanases 37 186 IPR036908 -
Cla05g00028 267 SMART dpbb_1 74 156 IPR007112 -
Cla05g00028 267 PRINTS Major pollen allergen Lol pI signature 76 87 IPR005795 GO:0005576|GO:0019953
Cla05g00028 267 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Cla05g00028 267 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Cla05g00028 267 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Cla05g00028 267 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Cla05g00028 267 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Cla05g00028 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
Cla05g00028 267 Gene3D - 24 162 IPR036908 -
Cla05g00028 267 Pfam Expansin C-terminal domain 168 250 IPR007117 -
Cla05g00028 267 PANTHER EXPANSIN-B3 4 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00028 Cla-Chr5:399180 Cla07g00284 Cla-Chr7:3123320 5.02E-80 dispersed
Cla05g00028 Cla-Chr5:399180 Cla02g01720 Cla-Chr2:32085352 4.80E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00028 - - csv:101219528 476.092