Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00038 ATGAAAAGCCTCCCATTGTTGTGCCAAATTATACTTAAAACCACATTTGGCTTTCCCTCTCTCTCCAGTCTCGATCATCAAATGGAACCATTTTTCAATTATATTGAAGCATCTGATGCTAAAGCAACCACCTTTTGCAACTCTGCCTCTATCACAACCCATGAATACCAACAAGTTTCTAAGAACCGTAAACAGAGGAGCACTCAAGAAAACAGAGATCATCACCCTATGTTCAGAGGAGTTCGAAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCTATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTACCTCGCCCGCTCTCCAGGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCAGCCGCCACATTTTCCGCTGGAAGTGACGCTGAAGGTGGTGGAGGAGAAGCGGCGGAAGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACGGGGGAGACAGAACAGAGGACTCTACAAACTCCCTGTCGACGGCAGCCGGTGATGAGACATTGTTCGATTTGCCAGATTTGTTCGTCGGAAGTTCTGATTTGAAAGACGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTCTGTGCTGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCATTCTGGGAACTAATTTAA 771 49.29 MKSLPLLCQIILKTTFGFPSLSSLDHQMEPFFNYIEASDAKATTFCNSASITTHEYQQVSKNRKQRSTQENRDHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSAGSDAEGGGGEAAEESRETLFPGSDGGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 503229 503999 - ClCG05G000340.2 Cla05g00038 271528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00038 256 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700|GO:0006355
Cla05g00038 256 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 51 254 - -
Cla05g00038 256 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Cla05g00038 256 PANTHER ETHYLENE RESPONSE FACTOR 51 254 - -
Cla05g00038 256 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Cla05g00038 256 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Cla05g00038 256 MobiDBLite consensus disorder prediction 165 203 - -
Cla05g00038 256 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Cla05g00038 256 MobiDBLite consensus disorder prediction 59 76 - -
Cla05g00038 256 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cla05g00038 256 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Cla05g00038 256 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Cla05g00038 256 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00038 Cla-Chr5:503229 Cla08g01223 Cla-Chr8:25148826 3.48E-41 dispersed
Cla05g00038 Cla-Chr5:503229 Cla11g00204 Cla-Chr11:2372697 6.81E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60972 PF00847 AP2 5.20E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00038 - - csv:101202887 377.867