Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00038 | ATGAAAAGCCTCCCATTGTTGTGCCAAATTATACTTAAAACCACATTTGGCTTTCCCTCTCTCTCCAGTCTCGATCATCAAATGGAACCATTTTTCAATTATATTGAAGCATCTGATGCTAAAGCAACCACCTTTTGCAACTCTGCCTCTATCACAACCCATGAATACCAACAAGTTTCTAAGAACCGTAAACAGAGGAGCACTCAAGAAAACAGAGATCATCACCCTATGTTCAGAGGAGTTCGAAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCTATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTACCTCGCCCGCTCTCCAGGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCAGCCGCCACATTTTCCGCTGGAAGTGACGCTGAAGGTGGTGGAGGAGAAGCGGCGGAAGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACGGGGGAGACAGAACAGAGGACTCTACAAACTCCCTGTCGACGGCAGCCGGTGATGAGACATTGTTCGATTTGCCAGATTTGTTCGTCGGAAGTTCTGATTTGAAAGACGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTCTGTGCTGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCATTCTGGGAACTAATTTAA | 771 | 49.29 | MKSLPLLCQIILKTTFGFPSLSSLDHQMEPFFNYIEASDAKATTFCNSASITTHEYQQVSKNRKQRSTQENRDHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSAGSDAEGGGGEAAEESRETLFPGSDGGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 503229 | 503999 | - | ClCG05G000340.2 | Cla05g00038 | 271528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00038 | 256 | Gene3D | AP2/ERF domain | 77 | 135 | IPR036955 | GO:0003700|GO:0006355 | |
Cla05g00038 | 256 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 51 | 254 | - | - | |
Cla05g00038 | 256 | CDD | AP2 | 78 | 136 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00038 | 256 | PANTHER | ETHYLENE RESPONSE FACTOR | 51 | 254 | - | - | |
Cla05g00038 | 256 | SUPERFAMILY | DNA-binding domain | 77 | 135 | IPR016177 | GO:0003677 | |
Cla05g00038 | 256 | SMART | rav1_2 | 77 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00038 | 256 | MobiDBLite | consensus disorder prediction | 165 | 203 | - | - | |
Cla05g00038 | 256 | Pfam | AP2 domain | 78 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00038 | 256 | MobiDBLite | consensus disorder prediction | 59 | 76 | - | - | |
Cla05g00038 | 256 | PRINTS | Ethylene responsive element binding protein signature | 78 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00038 | 256 | PRINTS | Ethylene responsive element binding protein signature | 100 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00038 | 256 | ProSiteProfiles | AP2/ERF domain profile. | 77 | 134 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00038 | 256 | MobiDBLite | consensus disorder prediction | 56 | 76 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00038 | Cla-Chr5:503229 | Cla08g01223 | Cla-Chr8:25148826 | 3.48E-41 | dispersed | |
Cla05g00038 | Cla-Chr5:503229 | Cla11g00204 | Cla-Chr11:2372697 | 6.81E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60972 | PF00847 | AP2 | 5.20E-15 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00038 | - | - | csv:101202887 | 377.867 |