Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00044 ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCCAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGGGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAGTAAGTGGCAATTTGGTCATTTCGTACGATTCTTCTCTGCCCGGTGGAAAGGATCGATCCCTTCAACTTCATAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTGTCTTCGTCTTCTTTGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCTCGATGGCCATTAACCCGTGGGCAGTGTTACCAATCCAACGTTGA 948 52.32 MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPVSGNLVISYDSSLPGGKDRSLQLHKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSLASAATTTRHPAAASVQRPSMAINPWAVLPIQR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 544855 547294 + ClCG05G000400.2 Cla05g00044 271534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00044 315 MobiDBLite consensus disorder prediction 80 96 - -
Cla05g00044 315 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355|GO:0043565
Cla05g00044 315 Gene3D - 142 216 - -
Cla05g00044 315 PANTHER - 2 163 - -
Cla05g00044 315 PANTHER - 188 311 - -
Cla05g00044 315 ProSitePatterns 'Homeobox' domain signature. 193 216 IPR017970 GO:0000981|GO:0006355
Cla05g00044 315 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634
Cla05g00044 315 Pfam Homeodomain 188 216 IPR001356 GO:0003677
Cla05g00044 315 ProSiteProfiles 'Homeobox' domain profile. 134 218 IPR001356 GO:0003677
Cla05g00044 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 2 163 - -
Cla05g00044 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 188 311 - -
Cla05g00044 315 Coils Coil 224 254 - -
Cla05g00044 315 MobiDBLite consensus disorder prediction 71 139 - -
Cla05g00044 315 SMART halz 218 261 IPR003106 GO:0006355|GO:0043565
Cla05g00044 315 MobiDBLite consensus disorder prediction 98 139 - -
Cla05g00044 315 SMART HOX_1 136 222 IPR001356 GO:0003677
Cla05g00044 315 SUPERFAMILY Homeodomain-like 188 227 IPR009057 -
Cla05g00044 315 CDD homeodomain 138 219 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00044 Cla06g00061 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00044 Cla-Chr5:544855 Cla10g00236 Cla-Chr10:2788478 1.92E-107 dispersed
Cla05g00044 Cla-Chr5:544855 Cla10g01677 Cla-Chr10:32506524 5.60E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60973 PF04618 HD-ZIP_N 4.50E-31 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00044 K09338 - csv:101222132 444.891