Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00044 | ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCCAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGGGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAGTAAGTGGCAATTTGGTCATTTCGTACGATTCTTCTCTGCCCGGTGGAAAGGATCGATCCCTTCAACTTCATAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTGTCTTCGTCTTCTTTGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCTCGATGGCCATTAACCCGTGGGCAGTGTTACCAATCCAACGTTGA | 948 | 52.32 | MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPVSGNLVISYDSSLPGGKDRSLQLHKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSLASAATTTRHPAAASVQRPSMAINPWAVLPIQR | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 544855 | 547294 | + | ClCG05G000400.2 | Cla05g00044 | 271534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00044 | 315 | MobiDBLite | consensus disorder prediction | 80 | 96 | - | - | |
Cla05g00044 | 315 | Pfam | Homeobox associated leucine zipper | 218 | 252 | IPR003106 | GO:0006355|GO:0043565 | |
Cla05g00044 | 315 | Gene3D | - | 142 | 216 | - | - | |
Cla05g00044 | 315 | PANTHER | - | 2 | 163 | - | - | |
Cla05g00044 | 315 | PANTHER | - | 188 | 311 | - | - | |
Cla05g00044 | 315 | ProSitePatterns | 'Homeobox' domain signature. | 193 | 216 | IPR017970 | GO:0000981|GO:0006355 | |
Cla05g00044 | 315 | Pfam | HD-ZIP protein N terminus | 1 | 101 | IPR006712 | GO:0005634 | |
Cla05g00044 | 315 | Pfam | Homeodomain | 188 | 216 | IPR001356 | GO:0003677 | |
Cla05g00044 | 315 | ProSiteProfiles | 'Homeobox' domain profile. | 134 | 218 | IPR001356 | GO:0003677 | |
Cla05g00044 | 315 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 | 2 | 163 | - | - | |
Cla05g00044 | 315 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 | 188 | 311 | - | - | |
Cla05g00044 | 315 | Coils | Coil | 224 | 254 | - | - | |
Cla05g00044 | 315 | MobiDBLite | consensus disorder prediction | 71 | 139 | - | - | |
Cla05g00044 | 315 | SMART | halz | 218 | 261 | IPR003106 | GO:0006355|GO:0043565 | |
Cla05g00044 | 315 | MobiDBLite | consensus disorder prediction | 98 | 139 | - | - | |
Cla05g00044 | 315 | SMART | HOX_1 | 136 | 222 | IPR001356 | GO:0003677 | |
Cla05g00044 | 315 | SUPERFAMILY | Homeodomain-like | 188 | 227 | IPR009057 | - | |
Cla05g00044 | 315 | CDD | homeodomain | 138 | 219 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g00044 | Cla06g00061 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00044 | Cla-Chr5:544855 | Cla10g00236 | Cla-Chr10:2788478 | 1.92E-107 | dispersed | |
Cla05g00044 | Cla-Chr5:544855 | Cla10g01677 | Cla-Chr10:32506524 | 5.60E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60973 | PF04618 | HD-ZIP_N | 4.50E-31 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00044 | K09338 | - | csv:101222132 | 444.891 |