Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00055 ATGAACGGCAAAACTCCGGCCACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATTAAGATTCTCGATCGTGAAAAAGTTCTTCGCCACAGGATGGTCGAACAGATCAAAAGAGAGATTTCGACTCTGAAAGTGATCAAGCATCCGAATGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAGATAGCCGCAAAGGGAAGGCTAAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATAAATGCTGTAGATTACTGCCATAGTAGAGGCGTCTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTGCGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACACCAAACTACGTAGCTCCTGAGGTCTTCAATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGGGTTATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTACAGAAAAATTTCAAATGCTGATTTTTCCTTTCCATCATGGTTCTCAAGTGGTGCAAGAAAACTAGTTTGCCGCATTCTTGATCCAGACCCTATTAATCGAATAACAATAGCCGAAATTCAAGAAGATCCATGGTTCAAGAAGGGCTACACCCCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCAAAGGAACATCTTGTGACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAGGAAACTGCAAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAAACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTTGAGGTGGCTCCTTCATTGCATATGGTCGAGCTTCGGAAAACAGGGGGCGATACGCTTGAGTTTCATAAGGCATGTCCACAATTTTGCTCATATGTCTCGATCACAACTGCCACACTGCCATGCGCCACAACTGCCATGCTCTTTCGCTCTCAAGAGGAGAAGGAAGGGGAGGCAGCAAGAAAAAGGAGGCAGTCTAGTTTTCCTCTCTGGAGACACCATTCGTCGGCCATATTCTCGCTTGTCCCCGTCACTCAGTCGCAGCACTCCAGCCCTCACGGTGTGGCCTTAGTCGCATGCTCAGCGTTGTGGTATCGTCATAGTTGCCGCGCCGCAGCGTCTTGGTCGTCGCACCGCAGTGTTCTGGTCATCATCAGTCCGCGTTGCCGCATCATTAGTCTCGACGCATCGTCAGTCCGCGTTGCCGCGTCATTAGCCTCGACGCATCATCAGTTCGCCCTCGACGTATCATCAGTCCGCGTTGCCGCATCATTAGCCCTCGACGCATCATCAGCCTGCATCGCCGCGTCGCCTATCCTCCCCACGACGCACTGTCACAGCCTACGTAGCGCGTTGCCGCATTGTAAGGAAGTTGCTGCCTCGCGGACACGCTTAGTATCGCTCGATAACGCTCGTAACGCTCAGTATCGCTCGTATCGCTCAGTGTCGATCCTTCTCGCTCTCGCAGTTAATGCGTACCCTCGGGACGCTTCCTATGCTTATGCCTATGCTTATGCTTATGCCGGGTACGCGGGCGCACACGACAAACAGGGTAAGGAGCATGGTGGCCCGGCGCATGGCCGAGGAAATCCGTGA 1995 48.77 MNGKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYRKISNADFSFPSWFSSGARKLVCRILDPDPINRITIAEIQEDPWFKKGYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACPQFCSYVSITTATLPCATTAMLFRSQEEKEGEAARKRRQSSFPLWRHHSSAIFSLVPVTQSQHSSPHGVALVACSALWYRHSCRAAASWSSHRSVLVIISPRCRIISLDASSVRVAASLASTHHQFALDVSSVRVAASLALDASSACIAASPILPTTHCHSLRSALPHCKEVAASRTRLVSLDNARNAQYRSYRSVSILLALAVNAYPRDASYAYAYAYAYAGYAGAHDKQGKEHGGPAHGRGNP 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 609156 616442 - ClCG05G000490.2 Cla05g00055 271545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00055 664 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Cla05g00055 664 CDD STKc_SnRK3 14 269 - -
Cla05g00055 664 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 418 - -
Cla05g00055 664 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cla05g00055 664 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00055 664 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Cla05g00055 664 SUPERFAMILY Protein kinase-like (PK-like) 12 271 IPR011009 -
Cla05g00055 664 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cla05g00055 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cla05g00055 664 Gene3D Kinase associated domain 1, KA1 306 428 - -
Cla05g00055 664 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00055 664 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00055 664 PANTHER - 7 418 - -
Cla05g00055 664 Pfam NAF domain 309 369 IPR004041 GO:0007165
Cla05g00055 664 CDD CIPK_C 313 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02427 Cla-Chr1:37880019 Cla05g00055 Cla-Chr5:609156 2.98E-166 dispersed
Cla02g02339 Cla-Chr2:38483633 Cla05g00055 Cla-Chr5:609156 0 dispersed
Cla05g00055 Cla-Chr5:609156 Cla08g01182 Cla-Chr8:24692033 3.03E-169 dispersed
Cla11g00052 Cla-Chr11:684173 Cla05g00055 Cla-Chr5:609156 3.50E-67 dispersed
Cla11g00721 Cla-Chr11:10102649 Cla05g00055 Cla-Chr5:609156 3.37E-49 dispersed
Cla05g00055 Cla-Chr5:609156 Cla03g00613 Cla-Chr3:7315854 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80521 PF00069 Pkinase 3.30E-71 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00055 - - csv:101203531 801.586