Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00072 ATGGAGTCTCCTGATACTGCTGCTGAGAAAGATCCTACCGGTCGATACGTTCGGTACGATGAAATCCTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTCGACGAAGTGGATGGAATTGAAGTTGCCTGGAACCAAGTTAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTAGAAAAGTTGTACTCCGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAAAATGTTGATATGAAGGCCATAAAGAACTGGGCGCGACAGGTTCTCCGAGGGTTGGTCTATCTTCACAGTCATGATCCCCCCATTATTCATAGAGATTTGAAAGGTGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAGATTGGAGATCTTGGACTAGCGATAGTTATGCAGCAGCCTACTGCTCAAAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTTACCTTTGAGTATCCATATAATGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGGTATTAAGCCTGCTTCCCTTGCTAAGGTGAGTGATCCACAGACTATGGAGTTCATCAATAAATGTTTGGTTCCAGCGCATGAGAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCATTCCTTCAAGTTGAGAACCCAAAGGAATCAGCGCGCAATCCCCTACAGCTACCTATCCAGGTTCCTAAATCAATGAATTTGCCAAAGAGTGGACCTATCTCCATGGACATTGACATTGACCACAAACAACATTCTTTAAGCACTTATGCTGAAAGCAATAGTGGGAGTCCACACTTTCCAGTTGTGGAGTTCCAGACAATGAATAAGAACAACGAGTTCAGGTTACGTGGAAATAAGAATGATGAAAACTCCGTGGCATTAACCTTGCGTATCGCAGACTCAAATGGTCGAGTGAGGAATATACATTTTACATTTTATCTCGATTCTGATACTGCACTATCAGTAGCAGCTGAAATGGCTGAACAATTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGGTTGGAAGCCCTTGTCTGTTAATTCCTCAAATGGAGAATCGAGTCTTTGCGGCGGTCCCCCCATCCTCAAAAGTGTGAAATCATCTCTTGGATCTCCATGGGGTTCAATGTCAACTGGGATTCATGATGGGTTGGTCGAGCAAGACATTTCCTCTGTGTTAGTGTGTAGTACTCAAAAGGATTGTCTGCAATCTGAGCGAGATGGCTGGGCTGACGATATTCCCAGTAGTCATATTTTTGATACTTGCCCTTCTTCTCCCAGTTTGGCTAATTTTGAGGACTTGAATTCACACGCTTCATTTGCGTCAGAGTTACTGGTCGAAGATTGCTCTACCAAAAGTTCTAAGGTGTTTGATTGTTCCAATATTGATGGAAGTTCAAAAGGCTCGAGCTGGTCGATTGGGGAACTAGAGCCCCACGGTTCATCATATGTTGAAGAAAAATTGCAAAGAAATGTTAGTGATGTTGGAATCATCACTCCCATGGATTATTTTGTGAAGAACTCGGTGGTGTCATTGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGTTCTTCGTTATCGTTTGCGGACAAGGATCTTGATGCTGAACTCAAGATGGAAATCAATGCTATCGAGACACATTATCGGCAACTGTTTGACGAGCTATCACGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 1989 41.58 MESPDTAAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQVLRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYNECKNPAQIFRKVTSGIKPASLAKVSDPQTMEFINKCLVPAHERLSAKELLKDSFLQVENPKESARNPLQLPIQVPKSMNLPKSGPISMDIDIDHKQHSLSTYAESNSGSPHFPVVEFQTMNKNNEFRLRGNKNDENSVALTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPGWKPLSVNSSNGESSLCGGPPILKSVKSSLGSPWGSMSTGIHDGLVEQDISSVLVCSTQKDCLQSERDGWADDIPSSHIFDTCPSSPSLANFEDLNSHASFASELLVEDCSTKSSKVFDCSNIDGSSKGSSWSIGELEPHGSSYVEEKLQRNVSDVGIITPMDYFVKNSVVSLPAPSEASNVMSLTSSCSSLSFADKDLDAELKMEINAIETHYRQLFDELSRMREEALEATRKRWIAKKKLIH 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 738084 741435 - ClCG05G000640.2 Cla05g00072 271562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00072 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cla05g00072 662 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00072 662 CDD STKc_WNK 15 274 - -
Cla05g00072 662 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 412 IPR024678 GO:0004674|GO:0005524
Cla05g00072 662 SUPERFAMILY Protein kinase-like (PK-like) 19 319 IPR011009 -
Cla05g00072 662 Gene3D Transferase(Phosphotransferase) domain 1 100 280 - -
Cla05g00072 662 SMART serkin_6 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00072 662 Gene3D - 355 426 - -
Cla05g00072 662 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00072 662 PANTHER KINASE DOMAIN PROTEIN 2 660 - -
Cla05g00072 662 Coils Coil 625 652 - -
Cla05g00072 662 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 660 - -
Cla05g00072 662 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00156 Cla-Chr1:1585161 Cla05g00072 Cla-Chr5:738084 8.29E-10 dispersed
Cla05g00072 Cla-Chr5:738084 Cla06g00905 Cla-Chr6:14489112 4.22E-157 dispersed
Cla05g00072 Cla-Chr5:738084 Cla06g00582 Cla-Chr6:7111152 2.21E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80522 PF00069 Pkinase 2.20E-53 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00072 K08867 - csv:101204101 1207.2