Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00072 | ATGGAGTCTCCTGATACTGCTGCTGAGAAAGATCCTACCGGTCGATACGTTCGGTACGATGAAATCCTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTCGACGAAGTGGATGGAATTGAAGTTGCCTGGAACCAAGTTAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTAGAAAAGTTGTACTCCGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAAAATGTTGATATGAAGGCCATAAAGAACTGGGCGCGACAGGTTCTCCGAGGGTTGGTCTATCTTCACAGTCATGATCCCCCCATTATTCATAGAGATTTGAAAGGTGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAGATTGGAGATCTTGGACTAGCGATAGTTATGCAGCAGCCTACTGCTCAAAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTTACCTTTGAGTATCCATATAATGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGGTATTAAGCCTGCTTCCCTTGCTAAGGTGAGTGATCCACAGACTATGGAGTTCATCAATAAATGTTTGGTTCCAGCGCATGAGAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCATTCCTTCAAGTTGAGAACCCAAAGGAATCAGCGCGCAATCCCCTACAGCTACCTATCCAGGTTCCTAAATCAATGAATTTGCCAAAGAGTGGACCTATCTCCATGGACATTGACATTGACCACAAACAACATTCTTTAAGCACTTATGCTGAAAGCAATAGTGGGAGTCCACACTTTCCAGTTGTGGAGTTCCAGACAATGAATAAGAACAACGAGTTCAGGTTACGTGGAAATAAGAATGATGAAAACTCCGTGGCATTAACCTTGCGTATCGCAGACTCAAATGGTCGAGTGAGGAATATACATTTTACATTTTATCTCGATTCTGATACTGCACTATCAGTAGCAGCTGAAATGGCTGAACAATTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGGTTGGAAGCCCTTGTCTGTTAATTCCTCAAATGGAGAATCGAGTCTTTGCGGCGGTCCCCCCATCCTCAAAAGTGTGAAATCATCTCTTGGATCTCCATGGGGTTCAATGTCAACTGGGATTCATGATGGGTTGGTCGAGCAAGACATTTCCTCTGTGTTAGTGTGTAGTACTCAAAAGGATTGTCTGCAATCTGAGCGAGATGGCTGGGCTGACGATATTCCCAGTAGTCATATTTTTGATACTTGCCCTTCTTCTCCCAGTTTGGCTAATTTTGAGGACTTGAATTCACACGCTTCATTTGCGTCAGAGTTACTGGTCGAAGATTGCTCTACCAAAAGTTCTAAGGTGTTTGATTGTTCCAATATTGATGGAAGTTCAAAAGGCTCGAGCTGGTCGATTGGGGAACTAGAGCCCCACGGTTCATCATATGTTGAAGAAAAATTGCAAAGAAATGTTAGTGATGTTGGAATCATCACTCCCATGGATTATTTTGTGAAGAACTCGGTGGTGTCATTGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGTTCTTCGTTATCGTTTGCGGACAAGGATCTTGATGCTGAACTCAAGATGGAAATCAATGCTATCGAGACACATTATCGGCAACTGTTTGACGAGCTATCACGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA | 1989 | 41.58 | MESPDTAAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQVLRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYNECKNPAQIFRKVTSGIKPASLAKVSDPQTMEFINKCLVPAHERLSAKELLKDSFLQVENPKESARNPLQLPIQVPKSMNLPKSGPISMDIDIDHKQHSLSTYAESNSGSPHFPVVEFQTMNKNNEFRLRGNKNDENSVALTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPGWKPLSVNSSNGESSLCGGPPILKSVKSSLGSPWGSMSTGIHDGLVEQDISSVLVCSTQKDCLQSERDGWADDIPSSHIFDTCPSSPSLANFEDLNSHASFASELLVEDCSTKSSKVFDCSNIDGSSKGSSWSIGELEPHGSSYVEEKLQRNVSDVGIITPMDYFVKNSVVSLPAPSEASNVMSLTSSCSSLSFADKDLDAELKMEINAIETHYRQLFDELSRMREEALEATRKRWIAKKKLIH | 662 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 738084 | 741435 | - | ClCG05G000640.2 | Cla05g00072 | 271562 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00072 | 662 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672|GO:0006468 | |
Cla05g00072 | 662 | Pfam | Protein kinase domain | 20 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g00072 | 662 | CDD | STKc_WNK | 15 | 274 | - | - | |
Cla05g00072 | 662 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 357 | 412 | IPR024678 | GO:0004674|GO:0005524 | |
Cla05g00072 | 662 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 319 | IPR011009 | - | |
Cla05g00072 | 662 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 280 | - | - | |
Cla05g00072 | 662 | SMART | serkin_6 | 17 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g00072 | 662 | Gene3D | - | 355 | 426 | - | - | |
Cla05g00072 | 662 | ProSiteProfiles | Protein kinase domain profile. | 17 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g00072 | 662 | PANTHER | KINASE DOMAIN PROTEIN | 2 | 660 | - | - | |
Cla05g00072 | 662 | Coils | Coil | 625 | 652 | - | - | |
Cla05g00072 | 662 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 2 | 660 | - | - | |
Cla05g00072 | 662 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 98 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00156 | Cla-Chr1:1585161 | Cla05g00072 | Cla-Chr5:738084 | 8.29E-10 | dispersed | |
Cla05g00072 | Cla-Chr5:738084 | Cla06g00905 | Cla-Chr6:14489112 | 4.22E-157 | dispersed | |
Cla05g00072 | Cla-Chr5:738084 | Cla06g00582 | Cla-Chr6:7111152 | 2.21E-157 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80522 | PF00069 | Pkinase | 2.20E-53 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00072 | K08867 | - | csv:101204101 | 1207.2 |