Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00088 ATGCCCAAGATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGATTCTACACAGATTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACGATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTCGACAGAGTTAGGTCATCGGCGGCGATGTCGATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCGAGTTTGGGAATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATACAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGAATTTTGTCTCAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCGTGTAATAGCAGATACGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGACGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTCGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATTGAAAATAAAGAACAATTCCTTGACGTCGACATTGAGGTTGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGTATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACAGTTTATAGCTGCATTTTCCCGGGACTCCACTTCGTTACATCCTTTATCAACAGTTGGTGAGAAGAGCCCAACTGAAAGCTTCTTCAGAAGTTTTGATTTACAACAGTTAGCTTTAAAAGTTGAAAAGGACCAACTTGGAAGTAAATAA 1953 45.21 MPKMKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETDSTQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPNLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDEFCLNPYQSQKLAQMQIDFSAATSRPSVINRVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIENKEQFLDVDIEVEAAHDEVIVKVSCPLESHPVSRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKEQFIAAFSRDSTSLHPLSTVGEKSPTESFFRSFDLQQLALKVEKDQLGSK 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 854614 857969 + ClCG05G000755.1 Cla05g00088 271578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00088 650 PANTHER MYC 16 616 IPR045084 GO:0003700|GO:0006355
Cla05g00088 650 Pfam Helix-loop-helix DNA-binding domain 450 496 IPR011598 GO:0046983
Cla05g00088 650 Gene3D - 439 510 IPR036638 GO:0046983
Cla05g00088 650 CDD bHLH_AtAIB_like 443 516 - -
Cla05g00088 650 MobiDBLite consensus disorder prediction 411 457 - -
Cla05g00088 650 PANTHER TRANSCRIPTION FACTOR MTB1 16 616 - -
Cla05g00088 650 MobiDBLite consensus disorder prediction 412 457 - -
Cla05g00088 650 MobiDBLite consensus disorder prediction 506 526 - -
Cla05g00088 650 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 446 495 IPR011598 GO:0046983
Cla05g00088 650 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 449 507 IPR036638 GO:0046983
Cla05g00088 650 SMART finulus 452 501 IPR011598 GO:0046983
Cla05g00088 650 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 243 IPR025610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00729 Cla-Chr2:8874435 Cla05g00088 Cla-Chr5:854614 1.35E-18 dispersed
Cla04g00446 Cla-Chr4:16832190 Cla05g00088 Cla-Chr5:854614 1.04E-07 dispersed
Cla05g00088 Cla-Chr5:854614 Cla07g00074 Cla-Chr7:856632 1.08E-95 dispersed
Cla05g00088 Cla-Chr5:854614 Cla10g00159 Cla-Chr10:1703280 2.16E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60976 PF14215 bHLH-MYC_N 6.90E-54 CL0161 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00088 - - csv:101208845 1138.64