Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00118 ATGGGAACTAGTGAAGAGGCGAAGTCTGTGAAGACTGAAAAACCATCCTCACCAACACCGGATCAGAATAGTGTGCCAAATTCAGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTAGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGCTCCACCACAGATGATTCCTCCATATGGTACTCCTTATGCTGCAATCTATTCTCATGGAGGTGTTTATGCCCATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGGGGCTGCACCTCCTTTGAGTATTGAAACACCTTCAAAGGTATCTGGAAATAGCAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGATGGCCTGGCAATGTCCATAGGCAATGTTAGCACTGAGACTGCTGAAGGGGGAGCTGAGCATGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAACGAAGCCGGGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGCCACAGGCAAGTCCAGTTACTGCTGCTGAAATGAATGAAAGCTCTAGCAAATTATTGGGCACGACCAAAGCAGCTAATGCGACTGGAAAACTTGGATCTGTGATTTCTCCTGGAATGTCTACTGCATTGGAACTGAGAAATCCTTCCAGTATAAATGCCATGACAAGTCCAACGACGGTTCCACCTTGTTCAGTACTGCCTTCTGAAGTCTGGCTCCAGAATGAAAAGGAGCTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACAGAGGAACTAGCTCGTAAAGTTGATTCGCTGACTGCCGAGAATGTTGCTATTCGATCTGAAATAAGTAGATTGTCAGAGAACTCCGAGAAACTTAAGAAAGAAAACTCTACCTTGATGGAAAAGCTTAAAAGCGCTCAATCAGGACGAACAGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAACCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTATCATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAACTGCGGCAGCTCTTGGATACGAGTCCGAGGGCGGATGCAGTCGCTGCTAGCTAA 1254 45.93 MGTSEEAKSVKTEKPSSPTPDQNSVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWAPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPGAAPPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTETAEGGAEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIEPQASPVTAAEMNESSSKLLGTTKAANATGKLGSVISPGMSTALELRNPSSINAMTSPTTVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSGRTEALDMNEKRMQQPVSTETKGPVNKSINEESIICKKNSSSGAKLRQLLDTSPRADAVAAS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1148327 1155812 + ClCG05G001030.1 Cla05g00118 271608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00118 417 SMART brlzneu 281 345 IPR004827 GO:0003700|GO:0006355
Cla05g00118 417 MobiDBLite consensus disorder prediction 367 381 - -
Cla05g00118 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700|GO:0006355
Cla05g00118 417 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Cla05g00118 417 MobiDBLite consensus disorder prediction 332 381 - -
Cla05g00118 417 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 417 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cla05g00118 417 Pfam Disordered region downstream of MFMR 132 263 - -
Cla05g00118 417 MobiDBLite consensus disorder prediction 395 417 - -
Cla05g00118 417 PANTHER G-BOX-BINDING FACTOR 3 1 417 - -
Cla05g00118 417 MobiDBLite consensus disorder prediction 332 347 - -
Cla05g00118 417 MobiDBLite consensus disorder prediction 153 242 - -
Cla05g00118 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 346 IPR004827 GO:0003700|GO:0006355
Cla05g00118 417 MobiDBLite consensus disorder prediction 279 312 - -
Cla05g00118 417 SUPERFAMILY Leucine zipper domain 284 340 IPR046347 GO:0003700|GO:0006355
Cla05g00118 417 MobiDBLite consensus disorder prediction 153 186 - -
Cla05g00118 417 MobiDBLite consensus disorder prediction 101 134 - -
Cla05g00118 417 Gene3D - 284 337 - -
Cla05g00118 417 MobiDBLite consensus disorder prediction 213 242 - -
Cla05g00118 417 MobiDBLite consensus disorder prediction 13 29 - -
Cla05g00118 417 Pfam bZIP transcription factor 281 343 IPR004827 GO:0003700|GO:0006355
Cla05g00118 417 CDD bZIP_plant_GBF1 286 334 IPR045314 GO:0003700|GO:0006355
Cla05g00118 417 Coils Coil 301 356 - -
Cla05g00118 417 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00118 Cla-Chr5:1148327 Cla10g00124 Cla-Chr10:1268952 5.23E-44 dispersed
Cla05g00118 Cla-Chr5:1148327 Cla09g01088 Cla-Chr9:11569360 3.31E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60980 PF16596 MFMR_assoc 8.40E-22 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00118 K09060 - csv:101213720 733.406