Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00137 ATGGAGGAATATGGCAAACTACAATACCCACCTCCGCCGCCGTCGCCGCCTCCGCCATGTTCAGATCCTGATGCAACCCCTCTGGAAATCGACTGGATCGCAGTTCTCTCTGACCAAGAAGTCACTGGAGACTTAGCGGCGGCAGCAGCAACTTGCGAGTCATCGGAAACGAGAAGGGACGAAGAGAAGGGGGAGCGGAGGAAGAAAGGCGGTCGCCGGTGGAGAAGGACCGCCGGCTGCCGGAGGTTTGAGTTTCAGACGAGGAGTGCTGAAGATATTCTTGATGATGGATATCGGTGGCGCAAGTACGGACAAAAAGCTGTCAAACACAGCCTCCATCCGAGGAGCTACTATAGGTGTACATACCTCACATGCAATGTGAAGAAACAAGTTCAAAGGCTATCAAAAGACACAAGTATTGTTGTGACTACTTATGAGGGAACTCACAACCATCCTTCTCACTTCCTCATGCAAACCCTAACTCCTCTTCTCAAACAAATTCAAACTACTTTTCCACTTTCTAAATTTTTTATGTATTAG 540 48.89 MEEYGKLQYPPPPPSPPPPCSDPDATPLEIDWIAVLSDQEVTGDLAAAAATCESSETRRDEEKGERRKKGGRRWRRTAGCRRFEFQTRSAEDILDDGYRWRKYGQKAVKHSLHPRSYYRCTYLTCNVKKQVQRLSKDTSIVVTTYEGTHNHPSHFLMQTLTPLLKQIQTTFPLSKFFMY 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1275566 1276435 - ClCG05G001210.1 Cla05g00137 271627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00137 179 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 53 169 - -
Cla05g00137 179 ProSiteProfiles WRKY domain profile. 89 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00137 179 MobiDBLite consensus disorder prediction 46 73 - -
Cla05g00137 179 MobiDBLite consensus disorder prediction 1 26 - -
Cla05g00137 179 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00137 179 SUPERFAMILY WRKY DNA-binding domain 87 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00137 179 Gene3D WRKY domain 78 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00137 179 MobiDBLite consensus disorder prediction 7 24 - -
Cla05g00137 179 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 169 IPR044810 GO:0003700
Cla05g00137 179 MobiDBLite consensus disorder prediction 54 68 - -
Cla05g00137 179 SMART WRKY_cls 94 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00137 Cla-Chr5:1275566 Cla07g01463 Cla-Chr7:31931187 4.16E-37 dispersed
Cla05g00137 Cla-Chr5:1275566 Cla07g00746 Cla-Chr7:20796642 9.73E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60982 PF03106 WRKY 4.30E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00137 - - cmo:103483240 253.447