Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00141 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCACCCTTCAAGATCCATTTCAACCCCCCAATTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGAGTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGACGAGTTTCGACCTTCCATGGTTGTTTAATGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTATCCATTTCAACCCCCCAATTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGAGTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGACGAGTTTCGACCTTCCATGGTTGTTTAATGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA 1806 50.5 MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSSSSNNSIPFSFTRDLTNQTKSHFFTLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPTSFDLPWLFNGNPDSEIVKLPYPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPTSFDLPWLFNGNPDSEIVKLPC 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1297484 1300147 - ClCG05G001250.1 Cla05g00141 271631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00141 601 SUPERFAMILY WRKY DNA-binding domain 421 484 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 Pfam WRKY DNA -binding domain 425 482 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 ProSiteProfiles WRKY domain profile. 148 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 MobiDBLite consensus disorder prediction 208 275 - -
Cla05g00141 601 ProSiteProfiles WRKY domain profile. 418 484 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 MobiDBLite consensus disorder prediction 350 416 - -
Cla05g00141 601 MobiDBLite consensus disorder prediction 481 509 - -
Cla05g00141 601 MobiDBLite consensus disorder prediction 80 146 - -
Cla05g00141 601 MobiDBLite consensus disorder prediction 23 44 - -
Cla05g00141 601 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 319 584 - -
Cla05g00141 601 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 314 IPR044810 GO:0003700
Cla05g00141 601 SUPERFAMILY WRKY DNA-binding domain 151 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 SMART WRKY_cls 153 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 SMART WRKY_cls 423 483 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 MobiDBLite consensus disorder prediction 211 239 - -
Cla05g00141 601 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 319 584 IPR044810 GO:0003700
Cla05g00141 601 MobiDBLite consensus disorder prediction 478 547 - -
Cla05g00141 601 MobiDBLite consensus disorder prediction 83 102 - -
Cla05g00141 601 Gene3D WRKY domain 407 477 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 Gene3D WRKY domain 137 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00141 601 MobiDBLite consensus disorder prediction 353 372 - -
Cla05g00141 601 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00141 Cla-Chr5:1297484 Cla06g01369 Cla-Chr6:27212737 8.43E-31 dispersed
Cla07g00246 Cla-Chr7:2705874 Cla05g00141 Cla-Chr5:1297484 7.21E-28 dispersed
Cla01g00904 Cla-Chr1:11676186 Cla05g00141 Cla-Chr5:1297484 1.79E-20 transposed
Cla01g02476 Cla-Chr1:38417034 Cla05g00141 Cla-Chr5:1297484 4.80E-44 transposed
Cla03g00810 Cla-Chr3:10213606 Cla05g00141 Cla-Chr5:1297484 3.85E-44 transposed
Cla10g01093 Cla-Chr10:25148545 Cla05g00141 Cla-Chr5:1297484 2.85E-30 transposed
Cla01g00089 Cla-Chr1:759937 Cla05g00141 Cla-Chr5:1297484 4.31E-48 wgd
Cla05g00141 Cla-Chr5:1297484 Cla07g00748 Cla-Chr7:20890213 4.66E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60983 PF03106 WRKY 1.00E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00141 K13425 - csv:101217082 502.671