Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00141 | ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCACCCTTCAAGATCCATTTCAACCCCCCAATTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGAGTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGACGAGTTTCGACCTTCCATGGTTGTTTAATGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTATCCATTTCAACCCCCCAATTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGAGTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGACGAGTTTCGACCTTCCATGGTTGTTTAATGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA | 1806 | 50.5 | MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSSSSNNSIPFSFTRDLTNQTKSHFFTLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPTSFDLPWLFNGNPDSEIVKLPYPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPTSFDLPWLFNGNPDSEIVKLPC | 601 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1297484 | 1300147 | - | ClCG05G001250.1 | Cla05g00141 | 271631 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00141 | 601 | SUPERFAMILY | WRKY DNA-binding domain | 421 | 484 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | Pfam | WRKY DNA -binding domain | 425 | 482 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | Pfam | WRKY DNA -binding domain | 155 | 212 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | ProSiteProfiles | WRKY domain profile. | 148 | 214 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 208 | 275 | - | - | |
Cla05g00141 | 601 | ProSiteProfiles | WRKY domain profile. | 418 | 484 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 350 | 416 | - | - | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 481 | 509 | - | - | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 80 | 146 | - | - | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 23 | 44 | - | - | |
Cla05g00141 | 601 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 319 | 584 | - | - | |
Cla05g00141 | 601 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 1 | 314 | IPR044810 | GO:0003700 | |
Cla05g00141 | 601 | SUPERFAMILY | WRKY DNA-binding domain | 151 | 214 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | SMART | WRKY_cls | 153 | 213 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | SMART | WRKY_cls | 423 | 483 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 211 | 239 | - | - | |
Cla05g00141 | 601 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 319 | 584 | IPR044810 | GO:0003700 | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 478 | 547 | - | - | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 83 | 102 | - | - | |
Cla05g00141 | 601 | Gene3D | WRKY domain | 407 | 477 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | Gene3D | WRKY domain | 137 | 207 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla05g00141 | 601 | MobiDBLite | consensus disorder prediction | 353 | 372 | - | - | |
Cla05g00141 | 601 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 1 | 314 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00141 | Cla-Chr5:1297484 | Cla06g01369 | Cla-Chr6:27212737 | 8.43E-31 | dispersed | |
Cla07g00246 | Cla-Chr7:2705874 | Cla05g00141 | Cla-Chr5:1297484 | 7.21E-28 | dispersed | |
Cla01g00904 | Cla-Chr1:11676186 | Cla05g00141 | Cla-Chr5:1297484 | 1.79E-20 | transposed | |
Cla01g02476 | Cla-Chr1:38417034 | Cla05g00141 | Cla-Chr5:1297484 | 4.80E-44 | transposed | |
Cla03g00810 | Cla-Chr3:10213606 | Cla05g00141 | Cla-Chr5:1297484 | 3.85E-44 | transposed | |
Cla10g01093 | Cla-Chr10:25148545 | Cla05g00141 | Cla-Chr5:1297484 | 2.85E-30 | transposed | |
Cla01g00089 | Cla-Chr1:759937 | Cla05g00141 | Cla-Chr5:1297484 | 4.31E-48 | wgd | |
Cla05g00141 | Cla-Chr5:1297484 | Cla07g00748 | Cla-Chr7:20890213 | 4.66E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60983 | PF03106 | WRKY | 1.00E-24 | CL0274 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00141 | K13425 | - | csv:101217082 | 502.671 |