Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00149 ATGATTCCCCGGAATCCTCCATTGCTGGGGTTTTCCGATGAGGTCAATGCCCTTAAAACCTCTGATTTGCTTTCCTTAGTTCCTCCTCTTTCCCTCTCTGAATCGATCGAAGAAGAAGAAATGTCAGTTTACGACGCTGCATTTGTGAACACGGAGCTCTCTAAACCCACCTCGATTTTCGGCCTTCGTCTCTGGGTTGTTATCGGAATCTTTGTCGGAGCTCTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTGACTTCTCGCAAGCGGAACCGCCATAAGAACCAAATCCGTTTTCCTAAGTCCACAACCCACCATTCTCCTCCTGCTGTTTCCAAAGAGATCCAGGAGATCGTCCACCACGCCGTGCCGGATCATCATCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGGAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCTTCTAGTGGTGAGAGTAGAGGCACTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCACACCTCGGTTGGGGCAGATGGTATACTCTCAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATCGTATATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTAGAAGCAATTGGACGCGTAAGACACAAGAATCTTGTCAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATTTAGACCAATGGCTTCATGGCGATGTTGGGGATGTGAGCCCTTTGACGTGGGAGATTCGTGTTAACATCATACTTGGCACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGTGATGTAAAATCAAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCTGAAAGAAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCACCTGAGTACGCCTGCACTGGAATGTTGAATGAAAAGAGTGATGTTTATAGCTTTGGAATTCTGATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTACAGTAGACCTCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAAGCAATGGTTGGTGACAGAAAATCTGAGGAAGTGGTCGACCCCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTTTGCTGGTTGCTCTTCGTTGTGTCGATCCTGATGCTACAAAGAGGCCGAAAATGGGACACGTCATTCACATGCTCGAGGCAGATAATTTGCTGTCTCATGATGAACACCGGGTTGGTAAGGACTCTTCTCATTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAACAGGCATCTTCTAATGTATGTGAAGGTGACAGTGATGGAAACATTCACCAACCAACTGTGCAGCGTCTGCTCAGCTTCCTTAAAATGCTAGCTGCTTTCTGTCCTGATATTGACTTAACAAAACCATTGTCTATAATTACCTTTCAGGCAAGTTTGGTAGAGACATCTCCAACTGTAACCTCTACTTCATGTGCTCTTTTGCTCTGTTCTGACTGGACCAGTAAGGCTAAGATGTGGACTAGAACTGAGGCATTCGCCTACGAAACCACGACGGGATTTTGTCTGATCTTCACGTTAGGCTGCCCGAAGTCTCATCCTAAGCTGGCTGTGGATGCTTCCAAAAGGATCAGATCAATCCTTTGGTTTATCTGCAACCATACATTGTCTTTTCGAGGACTCTCTGTCAAACTCAAAGCCTTTGGGAGTTTCTTCAAAACCCCCTTATCCAAAGCTTGCTTTTAG 1959 45.58 MIPRNPPLLGFSDEVNALKTSDLLSLVPPLSLSESIEEEEMSVYDAAFVNTELSKPTSIFGLRLWVVIGIFVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTTHHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHDEHRVGKDSSHSIQGHQHENRAVPRRVNNQKDEQASSNVCEGDSDGNIHQPTVQRLLSFLKMLAAFCPDIDLTKPLSIITFQASLVETSPTVTSTSCALLLCSDWTSKAKMWTRTEAFAYETTTGFCLIFTLGCPKSHPKLAVDASKRIRSILWFICNHTLSFRGLSVKLKAFGSFFKTPLSKACF 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1397457 1402215 + ClCG05G001340.2 Cla05g00149 271639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00149 652 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524
Cla05g00149 652 Pfam Protein kinase domain 201 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00149 652 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 42 475 - -
Cla05g00149 652 MobiDBLite consensus disorder prediction 495 510 - -
Cla05g00149 652 MobiDBLite consensus disorder prediction 151 170 - -
Cla05g00149 652 SUPERFAMILY Protein kinase-like (PK-like) 177 459 IPR011009 -
Cla05g00149 652 SMART serkin_6 198 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00149 652 CDD STKc_IRAK 204 459 - -
Cla05g00149 652 MobiDBLite consensus disorder prediction 469 510 - -
Cla05g00149 652 ProSiteProfiles Protein kinase domain profile. 198 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00149 652 Gene3D Phosphorylase Kinase; domain 1 174 265 - -
Cla05g00149 652 MobiDBLite consensus disorder prediction 469 494 - -
Cla05g00149 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cla05g00149 652 PANTHER OS01G0323000 PROTEIN 42 475 - -
Cla05g00149 652 Gene3D Transferase(Phosphotransferase) domain 1 266 476 - -
Cla05g00149 652 MobiDBLite consensus disorder prediction 154 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01655 Cla-Chr1:31407762 Cla05g00149 Cla-Chr5:1397457 0 dispersed
Cla02g00525 Cla-Chr2:5408472 Cla05g00149 Cla-Chr5:1397457 2.65E-167 dispersed
Cla05g00149 Cla-Chr5:1397457 Cla08g01583 Cla-Chr8:28504183 9.56E-177 dispersed
Cla05g00149 Cla-Chr5:1397457 Cla05g00913 Cla-Chr5:9057775 1.46E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80525 PF00069 Pkinase 6.40E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00149 - - csv:101219288 886.715