Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00164 ATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTGGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGATTTGCCTCCTACATATTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCGTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAGCTCGTTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAACTACCCACTGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTGACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATAGGCCGGAGCAAGAATTACCAGTCATCATATGTCTTCATGATGAAAAGCAATATGAATTTGACTTCTCTATTTATGTTCTCTTCTACAATCCACTCTCTTTAACCCCAAGTAAAAACAGCCAACAAAATTCTCTCCAATTTGAGCAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGATGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTTAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGAAAAACTTGAAAGTATAAAGGCACAACTAAATGAACAGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTTCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTCGAAGATAGGTTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGAGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCGTTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGCTAGACAGTGGACACGATACTTCACCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA 2763 43.97 MAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKSSGGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVRADKLCAEAECIEKGIVDMISLHRINKLVMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSETTHWRSQSLPLEQFNSREVGTPSNVRPRGRSLLFDHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLTRRSPSERSDNSIRSPRGVIDMAPSPLSRVELCANRPEQELPVIICLHDEKQYEFDFSIYVLFYNPLSLTPSKNSQQNSLQFEQDGKTSDCLYNQCERVMMEAANARRDAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKEKLESIKAQLNEQMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPFLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1511538 1517578 - ClCG05G001490.2 Cla05g00164 271654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00164 920 ProSiteProfiles Protein kinase domain profile. 562 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00164 920 ProSitePatterns Protein kinases ATP-binding region signature. 568 589 IPR017441 GO:0005524
Cla05g00164 920 CDD RING-Ubox_WDSUB1_like 854 895 - -
Cla05g00164 920 Pfam Protein kinase domain 567 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00164 920 ProSiteProfiles U-box domain profile. 849 920 IPR003613 GO:0004842|GO:0016567
Cla05g00164 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Cla05g00164 920 MobiDBLite consensus disorder prediction 215 252 - -
Cla05g00164 920 PANTHER OS02G0152300 PROTEIN 41 916 - -
Cla05g00164 920 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 916 - -
Cla05g00164 920 CDD STK_N 45 198 - -
Cla05g00164 920 SMART Ubox_2 853 916 IPR003613 GO:0004842|GO:0016567
Cla05g00164 920 Gene3D Transferase(Phosphotransferase) domain 1 635 833 - -
Cla05g00164 920 SUPERFAMILY RING/U-box 845 920 - -
Cla05g00164 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 848 920 IPR013083 -
Cla05g00164 920 SUPERFAMILY Protein kinase-like (PK-like) 536 819 IPR011009 -
Cla05g00164 920 Pfam U-box domain 851 920 IPR003613 GO:0004842|GO:0016567
Cla05g00164 920 MobiDBLite consensus disorder prediction 215 255 - -
Cla05g00164 920 Gene3D Phosphorylase Kinase; domain 1 542 634 - -
Cla05g00164 920 SMART serkin_6 562 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00164 920 Coils Coil 432 536 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00164 Cla06g00344 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01970 Cla-Chr2:34762145 Cla05g00164 Cla-Chr5:1511538 9.42E-25 dispersed
Cla05g00164 Cla-Chr5:1511538 Cla11g00152 Cla-Chr11:1806239 4.65E-107 dispersed
Cla11g01104 Cla-Chr11:22448886 Cla05g00164 Cla-Chr5:1511538 4.72E-86 dispersed
Cla05g00164 Cla-Chr5:1511538 Cla05g00891 Cla-Chr5:8805629 4.85E-27 wgd
Cla05g00164 Cla-Chr5:1511538 Cla06g00344 Cla-Chr6:4371393 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80527 PF00069 Pkinase 3.50E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00164 - - csv:101211387 1547.33