Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00185 ATGGACTCATCTTGTAATATTTGGAAGCAAAATGTGCTATATGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCAGTGTTCTTAGAAATAGAATTATTGATGCCAAGTTGACTGGCGGTTCAAGAGTAAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCATCTAGTGATTCAAATCATGTGAGTCTGGTTTGTGCTAGCAAGTTTGAAGGAGCTTTGCAATATTTTACGCACAAGAGATTCTTGAACTGGAACAATAAGGTAAGTGGAAGAAGGATGGGAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAAATACTGATGATGAAGGGTCCAGTTCTGGGCCTACCGATGCTGTAGGGTCAGGTGGTTCCAGAGAAGGGGGCGGAGAAGCAGAAACGGTAGAAACGGACATACCGACTGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACAATGTTCGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCGTGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCCGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCAAAAGGAGGAAACAATTTTCCGGAAACATCAGTAGATAGTGAGGGGGCAATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTAAAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAACAATAATGACTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAAGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTTCGGACGTCACTCAGGGGCCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGACATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCTGTGAAGGAGGTTGAATCTGGAGCAGAGAAGGCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTCTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTTCACTAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGAATTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACTAGCACTGATGAAGTTTCCTTGAACACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCGAAAAGAGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACCAAAGCGATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCTACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTTATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTGAAGGCAATAGTTGCTATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAATTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGATTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCTCGATTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTGCAAGATCATATCATTATTTGCGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGAGGAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTTTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGCTTACAGTTGGCTGCTGCGGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCTGAGCTGACTGAGCCACCCCGCCCCCTCAATTCTCACTCTCAAGAGTCCCGCGCCGCCACTTCTCCGCCGTACTCTCCGCCGTCCTCTACGTCGGTGCTGCTCCTCATCCGCTCTGTACCTCTATTATTCCTTATTCTTAGCAGAACGTGCAGAATTTTCTTACGCCATTTTCTAATGGCGTCGTCGATGAAATTCACAGATTGCTCCCCTTCCGCAACTGTTCGTCTTTGCCCCTCTACTCGAACCAGGCCTCGAAGCTCCGATGGCGCTGTTCTCTTTCACCGTCTTCTTGGCCTTTCGCGCCCTGCCTTTCCTAGAACTTTCGTTTCTCGCTCTTCGACTTCAACTTTGCCCGTCATCTCTGCTTCAATTTCAACCGACGCAACTGCAGAAGTGATTGATGGAAAATTAGTGGCGAAGCAGATTAGAGAGGAGATTACTGCTGAAGTATCACGAATGAAGGAGGCCATTGGTGTTGTTCCAGGCTTAGCAGTCATCCTTGTTGGAGATAGGAAGGATTCTGCAACTTATGTACGAAATAAGAAAAAAGCTTGTGAATCTGTGGGTATTAAATCTTTTGAAGTAAACTTACCTGAAGATTGTACTGAGCAAGAAGTACTCAAGTATGTATCCGACTTCAATGATGATCCATCTGTCCATGGAATCCTTGTTCAGTTACCTTTACCTAAACATATGAACGAACAGAATATATTGCATGCTGTTAGCATTGAGAAAGATGTAGATGGATTTCACCCACTAAACATCGGTCGTCTTGCAATGAGAGGAGAAGAACCATTGTTTGTTCCATGTACGCCAAAAGGGTGTATTGAATTGCTGCATAGATATAACATTAGTATCAAAGGGAAGAGAGCTGTTGTAATTGGTCGAAGCAATATTGTAGGAACTCCAGCTGCTTTTTTGCTTCAAGGAGAAGATGCAACAGTGAGCGTTGTTCATTCTAGGACCAAAGACCCTGAAGAGTTAACAAGACAGGCTGATATCATCATCTCTGCAGTTGGCAAAGCCAATATGGTTAAGGGCAGTTGGATAAAGCCTGGAGCAGTTATTATCGACGTTGGAATTAATCCAATAGAGGATGCAAGTAGTCCTCGTGGGTATCGGCTAGTAGGAGATGTTTGTTATGAGGAGGCCAGCAAAATTGCTTCAGCCATTACTCCTGTACCTGGGGGAGTTGGGCCGATGACGATAGCGATGCTGCTCTCCAACACACTTACAGCAGCCAAAAGAACACATAACTTCCAGTGA 4740 43.78 MDSSCNIWKQNVLYGSERTYCKTLDQFGPSSVLRNRIIDAKLTGGSRVSYKVPKKRNRIVASSDSNHVSLVCASKFEGALQYFTHKRFLNWNNKVSGRRMGMVHLECQSNDSLAFIDGNGRNMEYVNTDDEGSSSGPTDAVGSGGSREGGGEAETVETDIPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISEAAIALQDEATRAWNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELAKGGNNFPETSVDSEGAIDGKEEQEVLLVAQEDIKECRANLENCDAELKRLKSKKEELQKEVDRLNELAEKAQLNALKAEEDVATIMTLAEQAVAFELEAAQKVSDAEIALQKVEKSLSSSFVDTSDVTQGPNVIEEVENEDNKAVLEISGDIAVEMDRELPLSGDSLAIKSLPGSFSDSEDSDQPYYLSDSENGKLSSDSVKEVESGAEKAILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTKKQLPKLIVGAVLLGAGIAIFANRAERNSQMIQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPIIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTEPPRPLNSHSQESRAATSPPYSPPSSTSVLLLIRSVPLLFLILSRTCRIFLRHFLMASSMKFTDCSPSATVRLCPSTRTRPRSSDGAVLFHRLLGLSRPAFPRTFVSRSSTSTLPVISASISTDATAEVIDGKLVAKQIREEITAEVSRMKEAIGVVPGLAVILVGDRKDSATYVRNKKKACESVGIKSFEVNLPEDCTEQEVLKYVSDFNDDPSVHGILVQLPLPKHMNEQNILHAVSIEKDVDGFHPLNIGRLAMRGEEPLFVPCTPKGCIELLHRYNISIKGKRAVVIGRSNIVGTPAAFLLQGEDATVSVVHSRTKDPEELTRQADIIISAVGKANMVKGSWIKPGAVIIDVGINPIEDASSPRGYRLVGDVCYEEASKIASAITPVPGGVGPMTIAMLLSNTLTAAKRTHNFQ 1579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1670980 1688979 + ClCG05G001700.2 Cla05g00185 271675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00185 1579 MobiDBLite consensus disorder prediction 471 490 - -
Cla05g00185 1579 Gene3D - 596 983 IPR038770 -
Cla05g00185 1579 CDD NAD_bind_m-THF_DH_Cyclohyd 1401 1573 IPR020631 GO:0004488
Cla05g00185 1579 Pfam Sodium/hydrogen exchanger family 606 976 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla05g00185 1579 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1005 1145 IPR036291 -
Cla05g00185 1579 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 1291 1406 IPR020630 GO:0004488
Cla05g00185 1579 Gene3D Leucine Dehydrogenase, chain A, domain 1 1293 1570 - -
Cla05g00185 1579 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 1288 1407 IPR046346 -
Cla05g00185 1579 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 1409 1575 IPR020631 GO:0004488
Cla05g00185 1579 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1162 - -
Cla05g00185 1579 ProSiteProfiles RCK N-terminal domain profile. 1008 1128 IPR003148 GO:0006813
Cla05g00185 1579 MobiDBLite consensus disorder prediction 431 452 - -
Cla05g00185 1579 Gene3D - 1004 1163 - -
Cla05g00185 1579 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 607 887 IPR004771 GO:0006812|GO:0008324|GO:0016021
Cla05g00185 1579 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1408 1574 IPR036291 -
Cla05g00185 1579 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1162 - -
Cla05g00185 1579 MobiDBLite consensus disorder prediction 126 141 - -
Cla05g00185 1579 Coils Coil 163 183 - -
Cla05g00185 1579 MobiDBLite consensus disorder prediction 124 158 - -
Cla05g00185 1579 MobiDBLite consensus disorder prediction 1164 1184 - -
Cla05g00185 1579 MobiDBLite consensus disorder prediction 431 458 - -
Cla05g00185 1579 Coils Coil 283 338 - -
Cla05g00185 1579 Gene3D - 1291 1552 - -
Cla05g00185 1579 Hamap Bifunctional protein FolD [folD]. 1288 1576 IPR000672 GO:0004488
Cla05g00185 1579 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1319 1341 IPR000672 GO:0004488
Cla05g00185 1579 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1360 1387 IPR000672 GO:0004488
Cla05g00185 1579 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1532 1548 IPR000672 GO:0004488
Cla05g00185 1579 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1442 1462 IPR000672 GO:0004488
Cla05g00185 1579 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1491 1520 IPR000672 GO:0004488
Cla05g00185 1579 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1549 1567 IPR000672 GO:0004488
Cla05g00185 1579 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1395 1416 IPR000672 GO:0004488
Cla05g00185 1579 ProSitePatterns Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 1553 1561 IPR020867 GO:0003824
Cla05g00185 1579 MobiDBLite consensus disorder prediction 1160 1184 - -
Cla05g00185 1579 Pfam TrkA-N domain 1009 1120 IPR003148 GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00520 Cla-Chr4:18708566 Cla05g00185 Cla-Chr5:1670980 7.58E-132 dispersed
Cla05g00185 Cla-Chr5:1670980 Cla10g01026 Cla-Chr10:23854324 3.24E-121 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00185 - - cmo:103483290 1972.98