Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00192 | ATGCGTGATTCGATCCCACACTCCTCTACTCCCTTCCGAGCGGTGGATAATTCGCCTCTGCTTGGCCACTCCGTCACCGATGGCCTTTTCCGTTCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCCCTTCGAGGTGCTGTTCGTCTTCTCCGCCGCGCAAGTGGCCGCCAGATGATGCTCCGGGAGCCTTCTGTTCGGGTTCGTGAGACCGCCGCCGAGCAGCTCGAGGAGCGCCAGAGCGATTGGGCGTACTCCAAGCCCATTATTCTTCTGGACCTTCTATGGAATTTGGCCTTCGTCATCATTAGTTTCACTGTTCTAGGGCTCAGCACGAGGGAAAGTCCTTCAGTTCCTCTCAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCTGTTGAGTATAAGCGTCGGCGCTCGACAAGAGAGCCTGTTGGATTGGACCGTACCGGTGGTTGGACGAGCAGCGAGGATTCGAATTCGGTCTCTGGAAGTGATGGAGATGATTATGCGACAGAGGTCACCGTGAATGAAGAAGAATCTAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACAATGTTCTCTTTCATCTGGTGGCTGTTGGGCTTTTATTGGGTAACTGCTGGAGGCCAAGAATTGATAGAGGGTTCACCTCAGTTATACTGGCTTTGTATTACATTCCTTGCTTTTGATGTCGTATTTGTCCTAATTTGCGTTGCAATTGCATGTCTTGTTGGCATTGCTATTTGCTGCTGTCTGCCTTGCATCATTGCCATCTTGTATGCAGTTACCGATCAGGAAGGAGCTACAAAGGAAGAGATCGAGCGCCTACCCAAGTACAAATTTAACAAAACGGGTGATGTTGAGAAAGTGAATGGTGATATTCAGGAATCTGGTGGAGGAATAATGACTAACTGTGACAACGAAGCACCTACAGAGCGTTTTCTTCGCCCTGAAGATTCTGAATGTTGCATCTGCCTCTCTGCTTACGAGAACGGAGCGGAGCTACGAGAACTTCCCTGTAACCACCATTTTCACTGCAACTGCATCGACAAATGGCTGCACATGAATGCCACCTGCCCGCTCTGCAAGTTCAACATCTTGAAGCCAGACAGTTCCAGTAGCGAAGAAGTGTGA | 1158 | 49.31 | MRDSIPHSSTPFRAVDNSPLLGHSVTDGLFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLREPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTRESPSVPLRFWIIGYALQCIIHMSCVAVEYKRRRSTREPVGLDRTGGWTSSEDSNSVSGSDGDDYATEVTVNEEESSNLVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLCITFLAFDVVFVLICVAIACLVGIAICCCLPCIIAILYAVTDQEGATKEEIERLPKYKFNKTGDVEKVNGDIQESGGGIMTNCDNEAPTERFLRPEDSECCICLSAYENGAELRELPCNHHFHCNCIDKWLHMNATCPLCKFNILKPDSSSSEEV | 385 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1731311 | 1734238 | - | ClCG05G001800.1 | Cla05g00192 | 271682 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00192 | 385 | Pfam | Ring finger domain | 329 | 371 | IPR001841 | - | |
| Cla05g00192 | 385 | CDD | RING-H2_RNF111_like | 329 | 373 | - | - | |
| Cla05g00192 | 385 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 14 | 382 | - | - | |
| Cla05g00192 | 385 | PANTHER | TARGET OF ERK KINASE MPK-1 | 14 | 382 | - | - | |
| Cla05g00192 | 385 | SMART | ring_2 | 330 | 370 | IPR001841 | - | |
| Cla05g00192 | 385 | MobiDBLite | consensus disorder prediction | 150 | 176 | - | - | |
| Cla05g00192 | 385 | SUPERFAMILY | RING/U-box | 319 | 377 | - | - | |
| Cla05g00192 | 385 | ProSiteProfiles | Zinc finger RING-type profile. | 330 | 371 | IPR001841 | - | |
| Cla05g00192 | 385 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 379 | IPR013083 | - | |
| Cla05g00192 | 385 | MobiDBLite | consensus disorder prediction | 158 | 176 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00642 | Cla-Chr1:7398148 | Cla05g00192 | Cla-Chr5:1731311 | 5.06E-77 | dispersed | |
| Cla04g00610 | Cla-Chr4:20284498 | Cla05g00192 | Cla-Chr5:1731311 | 8.65E-81 | dispersed | |
| Cla05g00192 | Cla-Chr5:1731311 | Cla10g00333 | Cla-Chr10:4344080 | 3.56E-145 | dispersed | |
| Cla05g00192 | Cla-Chr5:1731311 | Cla06g01657 | Cla-Chr6:30084390 | 2.10E-12 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00192 | - | - | csv:101205399 | 736.102 |