Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00192 ATGCGTGATTCGATCCCACACTCCTCTACTCCCTTCCGAGCGGTGGATAATTCGCCTCTGCTTGGCCACTCCGTCACCGATGGCCTTTTCCGTTCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCCCTTCGAGGTGCTGTTCGTCTTCTCCGCCGCGCAAGTGGCCGCCAGATGATGCTCCGGGAGCCTTCTGTTCGGGTTCGTGAGACCGCCGCCGAGCAGCTCGAGGAGCGCCAGAGCGATTGGGCGTACTCCAAGCCCATTATTCTTCTGGACCTTCTATGGAATTTGGCCTTCGTCATCATTAGTTTCACTGTTCTAGGGCTCAGCACGAGGGAAAGTCCTTCAGTTCCTCTCAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCTGTTGAGTATAAGCGTCGGCGCTCGACAAGAGAGCCTGTTGGATTGGACCGTACCGGTGGTTGGACGAGCAGCGAGGATTCGAATTCGGTCTCTGGAAGTGATGGAGATGATTATGCGACAGAGGTCACCGTGAATGAAGAAGAATCTAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACAATGTTCTCTTTCATCTGGTGGCTGTTGGGCTTTTATTGGGTAACTGCTGGAGGCCAAGAATTGATAGAGGGTTCACCTCAGTTATACTGGCTTTGTATTACATTCCTTGCTTTTGATGTCGTATTTGTCCTAATTTGCGTTGCAATTGCATGTCTTGTTGGCATTGCTATTTGCTGCTGTCTGCCTTGCATCATTGCCATCTTGTATGCAGTTACCGATCAGGAAGGAGCTACAAAGGAAGAGATCGAGCGCCTACCCAAGTACAAATTTAACAAAACGGGTGATGTTGAGAAAGTGAATGGTGATATTCAGGAATCTGGTGGAGGAATAATGACTAACTGTGACAACGAAGCACCTACAGAGCGTTTTCTTCGCCCTGAAGATTCTGAATGTTGCATCTGCCTCTCTGCTTACGAGAACGGAGCGGAGCTACGAGAACTTCCCTGTAACCACCATTTTCACTGCAACTGCATCGACAAATGGCTGCACATGAATGCCACCTGCCCGCTCTGCAAGTTCAACATCTTGAAGCCAGACAGTTCCAGTAGCGAAGAAGTGTGA 1158 49.31 MRDSIPHSSTPFRAVDNSPLLGHSVTDGLFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLREPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTRESPSVPLRFWIIGYALQCIIHMSCVAVEYKRRRSTREPVGLDRTGGWTSSEDSNSVSGSDGDDYATEVTVNEEESSNLVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLCITFLAFDVVFVLICVAIACLVGIAICCCLPCIIAILYAVTDQEGATKEEIERLPKYKFNKTGDVEKVNGDIQESGGGIMTNCDNEAPTERFLRPEDSECCICLSAYENGAELRELPCNHHFHCNCIDKWLHMNATCPLCKFNILKPDSSSSEEV 385
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1731311 1734238 - ClCG05G001800.1 Cla05g00192 271682
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00192 385 Pfam Ring finger domain 329 371 IPR001841 -
Cla05g00192 385 CDD RING-H2_RNF111_like 329 373 - -
Cla05g00192 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 382 - -
Cla05g00192 385 PANTHER TARGET OF ERK KINASE MPK-1 14 382 - -
Cla05g00192 385 SMART ring_2 330 370 IPR001841 -
Cla05g00192 385 MobiDBLite consensus disorder prediction 150 176 - -
Cla05g00192 385 SUPERFAMILY RING/U-box 319 377 - -
Cla05g00192 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Cla05g00192 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 379 IPR013083 -
Cla05g00192 385 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00642 Cla-Chr1:7398148 Cla05g00192 Cla-Chr5:1731311 5.06E-77 dispersed
Cla04g00610 Cla-Chr4:20284498 Cla05g00192 Cla-Chr5:1731311 8.65E-81 dispersed
Cla05g00192 Cla-Chr5:1731311 Cla10g00333 Cla-Chr10:4344080 3.56E-145 dispersed
Cla05g00192 Cla-Chr5:1731311 Cla06g01657 Cla-Chr6:30084390 2.10E-12 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00192 - - csv:101205399 736.102