Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00193 ATGAGTTTTCTACCACGATTCCACTCTAGCGGCGCCGGCGGGGGAAACGGTGACGGCGACGGCGACGGAAGTCTTATGGCCGCTGGTGCTATTGCTCAGCCACATCTTATTACTCAATCTTCTTTCACTAAATCAATGTTCTCTTCCCCAACGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCGTCGGGGAGATGGTTGCGGCGGATGTTAGGAGGAGGAGTAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGACGGTGGTTCCGGCGAGGAAGTGGAGGGCGGCGGTGGTAGGAAGAAGAGGAAGAAACGGTACCACCGTCACAGTGTGGAACAGATCCAAGAACTGGAAGCTATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTAGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACACAACTGGAACGCCATGAGAACACATTACTAAGACAAGAGAATGAGAAGCTCCGAACAGAGAATATGGCAATTCGAGAGGCCATGAGGGAACCAATTTGCTCCAACTGCGGTGGACCGGCCATCATCGGAGAAATCTCCATCGAAGAACAGCAACTCAGAATCGAAAATGCCCGATTAAAGGACGAATTGGACCGAGTGTGTGCCCTAGCGGGGAAATTCCTGGGGCGGGCAGCAGTTCCGGTATCGCCGCCATTGGCATCAAGCTCGTGTTTGGAGGAATATGGAGGTGGGATGATGATGATGGAGAGATGCGTGTATTTGGAGATGGGTTTGGCAGCCATGGATGAGATTGTGAAAATGGCTAATGAGGAAGAGCCATTGTGGGTTAGGGAGAAACTGAATGAAGAAGAATATTTGAGAATGTTCAGTGGGAGTTGTTTTGGGGTTAAACACATTAATAATGGGTTTGTTTTTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCTGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGAGATGTTTCCGAACCTGGTCGCGACGGCAAGCACCACCGACGTAATCTCTGGTGGCATGGGAGGAACCAGGAACGGAGCTCTCCAGCTGATGCATGCAGAGCTTCAAATTCTGTCTCCCATGGTTCCGGTGAGACAATTAAGCTTCCTCCGCTTCTGTAAGCAGCACGCTGAAGGCGTTTGGGTTGTCGTCGATGTCTCCATCGATCCCATTACCGATACTTCTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGAGATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGTTACATTCACGAGCTATACCGGCCCCTCATTCGCTCCGGCCTTGGCTTTGGTGCACCACGGTGGATCGCCACGCTCCAACGCCAATCTGAGTGCCTTGCCATCCTCTCCACCCCGATAGACTATTCTGGAATATCAACGAATGGGCGGCGGAGCATGGTGAAGCTAGCGCAGCGGATGACGGTGAATTTTTGTGCAGGAATATGTGGGTCGACTATATACAAATGGAACAAGCTAAACACGAGAAATAACAACGTTGGAGAAGATGTGAGAGTGATGACGAGGAAGAGTGTGGAGGATCCCGGGGAGCCACCGGGGACAGTGCTGAGTGCAGCGACGTCGGTGTGGGTGGCGGAAGCGGCGGAGAGAGTGTTTGAGTTTCTTCGGGATGAGCGGCTGAGGAGTGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAGATGCTTCATATTCCCAAATCCCAACACCATCACCATCCCAACGCCGTCTCTCTCCTCCGTGCCACCCAGTCTCTAAATCCAAATCAGAGCAGCATGCTAATTCTACAAGAGACTTGCACCGATGCATCGGGATCGCTTGTAGTGTACGCGCCGGTGGACATTCCGGCCATGCAGGCGGTAATGAACGGTGGAGATTCAGCATACGTGGCCTTACTACCGTCGGGGTTCGCGGTGGTTCCGGCGGCGGAGGACGGTGGCGGAGGGAGCCTGTTGACGGTGGCGTTTCAGATACTGGTGAATAGTTTGCCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACGGTGAATAACTTGATTTCGTGTACGGTGCAAAAAATTAAAACCGCTCTCCGGTGTCACGCGCCTTCCACGTGA 2235 52.39 MSFLPRFHSSGAGGGNGDGDGDGSLMAAGAIAQPHLITQSSFTKSMFSSPTLSLALTNIDGLGVGEMVAADVRRRSREEEAAESRSGSENMDGGSGEEVEGGGGRKKRKKRYHRHSVEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRTENMAIREAMREPICSNCGGPAIIGEISIEEQQLRIENARLKDELDRVCALAGKFLGRAAVPVSPPLASSSCLEEYGGGMMMMERCVYLEMGLAAMDEIVKMANEEEPLWVREKLNEEEYLRMFSGSCFGVKHINNGFVFEASRQTALVFLNTSALLDTLMDPDRWVEMFPNLVATASTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWVVVDVSIDPITDTSSSPPCRRLPSGCLIHEMPNGYSKVTWVEHSEYDESYIHELYRPLIRSGLGFGAPRWIATLQRQSECLAILSTPIDYSGISTNGRRSMVKLAQRMTVNFCAGICGSTIYKWNKLNTRNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAEAAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKSQHHHHPNAVSLLRATQSLNPNQSSMLILQETCTDASGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAAEDGGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKTALRCHAPST 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1738233 1744313 - ClCG05G001810.2 Cla05g00193 271683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00193 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 256 IPR042160 -
Cla05g00193 744 SUPERFAMILY Bet v1-like 268 491 - -
Cla05g00193 744 SMART HOX_1 107 170 IPR001356 GO:0003677
Cla05g00193 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 59 256 - -
Cla05g00193 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 265 738 - -
Cla05g00193 744 Gene3D - 271 490 IPR023393 -
Cla05g00193 744 Coils Coil 207 227 - -
Cla05g00193 744 MobiDBLite consensus disorder prediction 73 115 - -
Cla05g00193 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 265 738 IPR042160 -
Cla05g00193 744 Pfam START domain 276 490 IPR002913 GO:0008289
Cla05g00193 744 ProSiteProfiles START domain profile. 264 494 IPR002913 GO:0008289
Cla05g00193 744 Coils Coil 160 195 - -
Cla05g00193 744 CDD homeodomain 113 166 IPR001356 GO:0003677
Cla05g00193 744 SMART START_1 273 491 IPR002913 GO:0008289
Cla05g00193 744 SUPERFAMILY Bet v1-like 509 727 - -
Cla05g00193 744 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Cla05g00193 744 MobiDBLite consensus disorder prediction 1 21 - -
Cla05g00193 744 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Cla05g00193 744 CDD START_ArGLABRA2_like 272 490 - -
Cla05g00193 744 Gene3D - 101 183 - -
Cla05g00193 744 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Cla05g00193 744 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00193 Cla06g00005 CCT
Cla05g00193 Cla06g00005 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00193 Cla-Chr5:1738233 Cla09g01099 Cla-Chr9:11839186 0 dispersed
Cla11g01479 Cla-Chr11:28421149 Cla05g00193 Cla-Chr5:1738233 1.27E-22 dispersed
Cla05g00193 Cla-Chr5:1738233 Cla05g00862 Cla-Chr5:8530092 0 wgd
Cla05g00193 Cla-Chr5:1738233 Cla06g00005 Cla-Chr6:79777 6.83E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60990 PF01852 START 8.00E-47 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00193 K09338 - csv:101222248 937.176