Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00211 | ATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTTTATGAATTTTCAAGCTCAAGCATGCAAGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCGTCAACATGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGAATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACCTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAACGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAAGTGA | 651 | 43.01 | MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLARQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLESSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVERKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSK | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1884372 | 1890388 | + | ClCG05G001985.1 | Cla05g00211 | 271701 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00211 | 216 | Coils | Coil | 145 | 172 | - | - | |
Cla05g00211 | 216 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 212 | - | - | |
Cla05g00211 | 216 | Pfam | K-box region | 86 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla05g00211 | 216 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | PANTHER | MADS BOX PROTEIN | 1 | 212 | - | - | |
Cla05g00211 | 216 | Coils | Coil | 123 | 143 | - | - | |
Cla05g00211 | 216 | ProSiteProfiles | K-box domain profile. | 89 | 180 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla05g00211 | 216 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | SUPERFAMILY | SRF-like | 3 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Cla05g00211 | 216 | CDD | MADS_MEF2_like | 3 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cla05g00211 | 216 | Coils | Coil | 89 | 116 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00524 | Cla-Chr1:5706644 | Cla05g00211 | Cla-Chr5:1884372 | 1.67E-63 | dispersed | |
Cla05g00211 | Cla-Chr5:1884372 | Cla06g00020 | Cla-Chr6:251505 | 8.98E-74 | dispersed | |
Cla08g00049 | Cla-Chr8:1269197 | Cla05g00211 | Cla-Chr5:1884372 | 7.06E-35 | transposed | |
Cla01g00316 | Cla-Chr1:3354653 | Cla05g00211 | Cla-Chr5:1884372 | 2.05E-74 | wgd | |
Cla05g00211 | Cla-Chr5:1884372 | Cla05g00836 | Cla-Chr5:8269944 | 4.07E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60993 | PF01486 | K-box | 3.30E-25 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00211 | - | - | csv:101209501 | 312.383 |