Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00211 ATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTTCTAGAGGAAAGCTTTATGAATTTTCAAGCTCAAGCATGCAAGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCGTCAACATGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGAATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACCTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAACGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAAGTGA 651 43.01 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLARQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLESSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVERKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1884372 1890388 + ClCG05G001985.1 Cla05g00211 271701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00211 216 Coils Coil 145 172 - -
Cla05g00211 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla05g00211 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla05g00211 216 PANTHER MADS-BOX PROTEIN SOC1 1 212 - -
Cla05g00211 216 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g00211 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla05g00211 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla05g00211 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla05g00211 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla05g00211 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla05g00211 216 PANTHER MADS BOX PROTEIN 1 212 - -
Cla05g00211 216 Coils Coil 123 143 - -
Cla05g00211 216 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g00211 216 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cla05g00211 216 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Cla05g00211 216 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Cla05g00211 216 Coils Coil 89 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00524 Cla-Chr1:5706644 Cla05g00211 Cla-Chr5:1884372 1.67E-63 dispersed
Cla05g00211 Cla-Chr5:1884372 Cla06g00020 Cla-Chr6:251505 8.98E-74 dispersed
Cla08g00049 Cla-Chr8:1269197 Cla05g00211 Cla-Chr5:1884372 7.06E-35 transposed
Cla01g00316 Cla-Chr1:3354653 Cla05g00211 Cla-Chr5:1884372 2.05E-74 wgd
Cla05g00211 Cla-Chr5:1884372 Cla05g00836 Cla-Chr5:8269944 4.07E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60993 PF01486 K-box 3.30E-25 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00211 - - csv:101209501 312.383