Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00223 ATGGAACTGATTATCAATATCTTCACCCTCATTTTCATCGTTCTCTCCCTCTTCTGTCTCTCCTTCTTCATTCTCCTCCTCCGAACGCTCGCCGGAAAGTCCATAACCAACTCCGACTACCCGCCGGTGTACGGCACCATTTACGGCCAGGCTTTCTACTTCAACAACCTGTACGACCATCTGACGGCGGTGGCGAAACGGCATAGAACCTTCCGACTGATCGGGACGGCGTACAGCGAGATATACACGGTCGATCCGAGAAACATCGAACAGATATTGAAGACGAAATTCGACAAGTACTCGAAAGGAAGGAAAGATGAAGAAGTGTGTGGGGATTTGTTCGGAGAGGGAATTTTTTTGGTGGATGGAGAAAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAAGATTGTTAGGGATTTTAGTTGCTCTGTTTTCAGAAGAAATGCGGGTAAACTTGTTGGAATTCTTTGGGAGTTCTCCGCCATGGCTCGGGTCTTCGATGTCCAGGATTTGCTAATGCGATGCTCTTTGGACTCCATTTTCAAAGTTGGGTTCGGCGTCGATTTGAATTGCTTGGAGGAACCAAGCAAAGCAGGGAGCGGGTTCACGAAGGCCTTTGATGATTCTAGCGCTCAGGTTTTTTGGCGCTACATCGATCCTTTCTGGAAATTTAAAAGATTTCTCAACATTGGTTCCGAAGCTTCGTTTAGGAACAACCTCAAGGTAATCGATGCTTTTGTGCACCGGTTGATCAGTGCTAGGAGAAAATTGCTTCACCAACCAAATCTCAAGAATGACAAAGAGGACATACTTTCGAGGTTTCTGATGGAAAGTGAGAAGGATCCGACAAGAATGAATGATCAATATCTGAGAGATATAGTCCTGAATTTCATGTTGGCTGGCAGGGATACAACTGCAGGAACTCTGTCTTGGTTCTTCTATATGCTATGCAAGAACCCTTTGATACAGGAAAAAGTTGCAGAAGAAGTGAGCCAAATTGTTGGGGTTCAAGGGGAAGAAGCTGATATAAATTTGTTCATACAAAACTTAACTGATTCAGCTCTTGATAAAATGCATTATCTCCATGCAGCATTGACAGAGACTCTAAGGCTCTACCCTGCTGTCCCTGTGGATGGAAGGACTGCAGAAATTGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGGGATGGAGTATACTACTTGGCCTATTCCATGGGCAGGATGCCCTGCCTTTGGGGAGAAGATGCTGAAGATTTTAAACCAGAGAGATGGCTTGAAAATGGAACTTTTCGACCCGAATCCCCTTTCAAATTCATAGCATTTCATGCGGGTCCTCGAACGTGTTTGGGAAAGGATTTTGCTTATCGACAAATGAAGATAGTATCTGCTACACTGCTTCATTTTTTTCGATTCAAATTAGCCGATCCAACGAGAAATATAACTTATAGGATCATGCTTACCCTTCACATCGATGGAGGTTTCAAATTCATTCAACGTCCCGAATTCCCTCGCTTTGCTCCGTCTCCACATTTCTTGCTACCGGAGTTCGACGGTGGCCATCCGATGAAATCTTTGGCGAAGGACGACACCGAATACCCGAAGCGGCAATGGTCCTTGCAAGACTTCGACGTAGGAAAGCCCCTCGGCAAAGGAAAATTCGGCAGAGTCTATCTAGCAAGAGAAGTCAGGGAGCTCCGATTTGATTTTCAGAGCAAGTATATAGTAGCACTGAAGGTGATTTTCAAGGAGCAGATGGAGAAGTACAGGATTCATCATCAGTTAAGGAGAGAGATGGAAATCCAGACCAGTCTTCGGCACCCCAACATCTTGCGCCTCTATGGATGGTTTCATGATGCCGAACGGATTTTCTTGATATTGGAATACGCTCACCGCGGTGAGCTTTATAGGGAGCTTAGGAAAACTGGTCATCTCAGCGAGAAGCAAGCTGCCACCTACATTTTAAGCCTCACACAAGCACTGGCATACTGCCATGAGAAGCATGTGATTCACAGGGACATTAAGCCAGAAAATTTGCTCCTTGATCATGAGGGTCGGTTGAAAATTGCAGATTTTGGATGGTCTGTACAGTCAAGAAGCAAGAGACATACCATGTGTGGAACTCTTGATTATTTAGCCCCAGAAATGGTGGAGAATAAAGCTCACGACTATGCAGTAGATAATTGGACTTTGGGCATCCTTTGCTATGAGTTCCTTTATGGAGTGCCTCCATTTGAAGCTGAGAGTCAAAGTGACACGTTTAAAAGGATAGTGAAGGTTGATTTGGATTTTCCTTTGGCCCCTCATGTTTCTTCAGAAGCAAAAGACCTGATAGGCCGGCTATTGGTGAAGGATTCCTCTAGAAGACTTTCACTTCAGAAGATAGTGGAGCATCCTTGGATAATCAAGTATGCTGATCCATCTGGTATTTGCAATACTAGGTAG 2463 44.7 MELIINIFTLIFIVLSLFCLSFFILLLRTLAGKSITNSDYPPVYGTIYGQAFYFNNLYDHLTAVAKRHRTFRLIGTAYSEIYTVDPRNIEQILKTKFDKYSKGRKDEEVCGDLFGEGIFLVDGEKWKQQRKLASYEFSTKIVRDFSCSVFRRNAGKLVGILWEFSAMARVFDVQDLLMRCSLDSIFKVGFGVDLNCLEEPSKAGSGFTKAFDDSSAQVFWRYIDPFWKFKRFLNIGSEASFRNNLKVIDAFVHRLISARRKLLHQPNLKNDKEDILSRFLMESEKDPTRMNDQYLRDIVLNFMLAGRDTTAGTLSWFFYMLCKNPLIQEKVAEEVSQIVGVQGEEADINLFIQNLTDSALDKMHYLHAALTETLRLYPAVPVDGRTAEIDDILPDGYKLRKGDGVYYLAYSMGRMPCLWGEDAEDFKPERWLENGTFRPESPFKFIAFHAGPRTCLGKDFAYRQMKIVSATLLHFFRFKLADPTRNITYRIMLTLHIDGGFKFIQRPEFPRFAPSPHFLLPEFDGGHPMKSLAKDDTEYPKRQWSLQDFDVGKPLGKGKFGRVYLAREVRELRFDFQSKYIVALKVIFKEQMEKYRIHHQLRREMEIQTSLRHPNILRLYGWFHDAERIFLILEYAHRGELYRELRKTGHLSEKQAATYILSLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGVPPFEAESQSDTFKRIVKVDLDFPLAPHVSSEAKDLIGRLLVKDSSRRLSLQKIVEHPWIIKYADPSGICNTR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1993434 2003315 + ClCG05G002080.1 Cla05g00223 271713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00223 820 Gene3D Transferase(Phosphotransferase) domain 1 640 815 - -
Cla05g00223 820 ProSiteProfiles Protein kinase domain profile. 549 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00223 820 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 Pfam Protein kinase domain 550 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00223 820 PANTHER CYTOCHROME P450 7 508 - -
Cla05g00223 820 PANTHER CYTOCHROME P450, FAMILY 704, SUBFAMILY A, POLYPEPTIDE 1 7 508 - -
Cla05g00223 820 CDD STKc_Aurora 548 807 - -
Cla05g00223 820 SUPERFAMILY Cytochrome P450 42 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 Pfam Cytochrome P450 50 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Cla05g00223 820 SMART serkin_6 549 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00223 820 SUPERFAMILY Protein kinase-like (PK-like) 538 812 IPR011009 -
Cla05g00223 820 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672|GO:0006468
Cla05g00223 820 Gene3D Cytochrome P450 43 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00223 820 ProSitePatterns Protein kinases ATP-binding region signature. 555 585 IPR017441 GO:0005524
Cla05g00223 820 Gene3D Phosphorylase Kinase; domain 1 537 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00223 Cla-Chr5:1993434 Cla11g01469 Cla-Chr11:28335109 5.39E-128 dispersed
Cla11g00183 Cla-Chr11:2179226 Cla05g00223 Cla-Chr5:1993434 8.30E-34 dispersed
Cla05g00218 Cla-Chr5:1934670 Cla05g00223 Cla-Chr5:1993434 3.67E-168 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80528 PF00067 p450 1.10E-73 No_clan Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00223 - - csv:101210732 909.057