Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00226 ATGTCTGTTACTTTGCACACAAATCTCGGGGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCCAAGTCTGCCGAGGCAAGTTCTTCGCTCCTTTTGCAACGCACTCCATTTCTGAAAGGGCCGTCTGCAATTGCACTTGATTGGAAGTTATACAAAACCTCGAGCGCGCAGCTTTTGCTGATTGTTAGAGATGTTATTAGTGAAGTCTATCTACTATCTGTTTGTAACTTTTTGGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACCGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGCGCAAATACGAATGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTCGGTAGAGTGATTCATGGGTTCGAAGTACTTGATATCATGGAAAAGACACAAACTGGACCGGGTGATCGTCCTCTTGCAGAGATCAGGCTCAATCGAGTGACGATACACGCTAATCCTCTTGCAGGCTAA 633 42.97 MSVTLHTNLGDIKCEIFCDEVPKSAEASSSLLLQRTPFLKGPSAIALDWKLYKTSSAQLLLIVRDVISEVYLLSVCNFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 210
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 2017811 2020437 + ClCG05G002110.1 Cla05g00226 271716
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00226 210 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 69 209 - -
Cla05g00226 210 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 87 104 IPR020892 GO:0003755|GO:0006457
Cla05g00226 210 PIRSF Peptidylpro_ismrse 55 207 IPR024936 GO:0003755
Cla05g00226 210 PIRSF Peptidylpro_ismrse 1 40 IPR024936 GO:0003755
Cla05g00226 210 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 29 IPR044666 -
Cla05g00226 210 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 69 209 IPR044666 -
Cla05g00226 210 CDD Cyclophilin_PPIL3_like 1 203 - -
Cla05g00226 210 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 75 202 IPR002130 GO:0000413|GO:0003755
Cla05g00226 210 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 2 29 - -
Cla05g00226 210 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 203 IPR002130 GO:0000413|GO:0003755
Cla05g00226 210 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 104 IPR002130 GO:0000413|GO:0003755
Cla05g00226 210 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Cla05g00226 210 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Cla05g00226 210 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 150 162 IPR002130 GO:0000413|GO:0003755
Cla05g00226 210 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 163 178 IPR002130 GO:0000413|GO:0003755
Cla05g00226 210 Gene3D - 1 210 IPR029000 -
Cla05g00226 210 SUPERFAMILY Cyclophilin-like 69 206 IPR029000 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00226 Cla-Chr5:2017811 Cla10g01783 Cla-Chr10:33755927 1.16E-42 dispersed
Cla05g00226 Cla-Chr5:2017811 Cla01g01716 Cla-Chr1:32086444 4.98E-48 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00226 K12734 - csv:101211474 304.293