Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00226 | ATGTCTGTTACTTTGCACACAAATCTCGGGGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCCAAGTCTGCCGAGGCAAGTTCTTCGCTCCTTTTGCAACGCACTCCATTTCTGAAAGGGCCGTCTGCAATTGCACTTGATTGGAAGTTATACAAAACCTCGAGCGCGCAGCTTTTGCTGATTGTTAGAGATGTTATTAGTGAAGTCTATCTACTATCTGTTTGTAACTTTTTGGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACCGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGCGCAAATACGAATGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTCGGTAGAGTGATTCATGGGTTCGAAGTACTTGATATCATGGAAAAGACACAAACTGGACCGGGTGATCGTCCTCTTGCAGAGATCAGGCTCAATCGAGTGACGATACACGCTAATCCTCTTGCAGGCTAA | 633 | 42.97 | MSVTLHTNLGDIKCEIFCDEVPKSAEASSSLLLQRTPFLKGPSAIALDWKLYKTSSAQLLLIVRDVISEVYLLSVCNFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG | 210 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2017811 | 2020437 | + | ClCG05G002110.1 | Cla05g00226 | 271716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00226 | 210 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 | 69 | 209 | - | - | |
| Cla05g00226 | 210 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 87 | 104 | IPR020892 | GO:0003755|GO:0006457 | |
| Cla05g00226 | 210 | PIRSF | Peptidylpro_ismrse | 55 | 207 | IPR024936 | GO:0003755 | |
| Cla05g00226 | 210 | PIRSF | Peptidylpro_ismrse | 1 | 40 | IPR024936 | GO:0003755 | |
| Cla05g00226 | 210 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 29 | IPR044666 | - | |
| Cla05g00226 | 210 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 69 | 209 | IPR044666 | - | |
| Cla05g00226 | 210 | CDD | Cyclophilin_PPIL3_like | 1 | 203 | - | - | |
| Cla05g00226 | 210 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 75 | 202 | IPR002130 | GO:0000413|GO:0003755 | |
| Cla05g00226 | 210 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 | 2 | 29 | - | - | |
| Cla05g00226 | 210 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 62 | 203 | IPR002130 | GO:0000413|GO:0003755 | |
| Cla05g00226 | 210 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 92 | 104 | IPR002130 | GO:0000413|GO:0003755 | |
| Cla05g00226 | 210 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 66 | 81 | IPR002130 | GO:0000413|GO:0003755 | |
| Cla05g00226 | 210 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 135 | 150 | IPR002130 | GO:0000413|GO:0003755 | |
| Cla05g00226 | 210 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 150 | 162 | IPR002130 | GO:0000413|GO:0003755 | |
| Cla05g00226 | 210 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 163 | 178 | IPR002130 | GO:0000413|GO:0003755 | |
| Cla05g00226 | 210 | Gene3D | - | 1 | 210 | IPR029000 | - | |
| Cla05g00226 | 210 | SUPERFAMILY | Cyclophilin-like | 69 | 206 | IPR029000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00226 | Cla-Chr5:2017811 | Cla10g01783 | Cla-Chr10:33755927 | 1.16E-42 | dispersed | |
| Cla05g00226 | Cla-Chr5:2017811 | Cla01g01716 | Cla-Chr1:32086444 | 4.98E-48 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00226 | K12734 | - | csv:101211474 | 304.293 |