Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00231 | ATGGATCGAGCCACCGCCGCACGCGGCCGTCCGCTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCACCACCATTTCCTCCACCAAAACTCCGATCAACAGCACAATGGAAATAGTAGCTCCGGCGGCGACGGCGGCCGAGACGGTGAGGTCTTGAGACGACCACGAGGCCGCCCCGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGATAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAATGACGTGATCGAAACCCTCACGATTTTCGCACGAAAGCGCCAGCGTGGCATTTGCGTGCTGACCGGCGCCGGAGCGGTCACCAACGTCATCCTCAAGCAGCCGGGGGCCGCGGTCGCCGCCGCTGGACCGGTGATCTCTCTGCCGGGGAGATTTGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCGCCGCCAGCGCCGGCGGCGGCGTCTGGGCTGACCGTGTACTTGTCCGGCGGGCAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGGCTACCGGTGGAGGATGACGACGTGGAAGCGGCAACAGCGGCGGATGCCGGAAGTAGTCCGATCAGGTCACCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGAGCACAGGTCGCACTCCACCATTTTAG | 813 | 61.38 | MDRATAARGRPLPPPFISRNLHLNPHHHFLHQNSDQQHNGNSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARKRQRGICVLTGAGAVTNVILKQPGAAVAAAGPVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADAGSSPIRSPENAVQQQQFLPELHGLAPHLMNTCQLPTEPYWSTGRTPPF | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2071941 | 2072753 | - | ClCG05G002155.1 | Cla05g00231 | 271721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00231 | 270 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Cla05g00231 | 270 | ProSiteProfiles | PPC domain profile profile. | 80 | 220 | IPR005175 | - | |
| Cla05g00231 | 270 | CDD | DUF296 | 84 | 155 | IPR005175 | - | |
| Cla05g00231 | 270 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 84 | 200 | IPR005175 | - | |
| Cla05g00231 | 270 | Gene3D | - | 83 | 218 | - | - | |
| Cla05g00231 | 270 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 | 32 | 270 | - | - | |
| Cla05g00231 | 270 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 80 | 213 | - | - | |
| Cla05g00231 | 270 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 32 | 270 | IPR014476 | GO:0003680 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00231 | Cla-Chr5:2071941 | Cla05g00274 | Cla-Chr5:2486749 | 3.90E-74 | dispersed | |
| Cla01g00339 | Cla-Chr1:3653470 | Cla05g00231 | Cla-Chr5:2071941 | 1.74E-68 | wgd | |
| Cla05g00231 | Cla-Chr5:2071941 | Cla06g00029 | Cla-Chr6:337812 | 2.64E-75 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00231 | - | - | bhj:120093013 | 399.438 |