Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00235 ATGAATCCGAGCAAAATTGAAGAGGATCTCTTCCATCACCACCGTCTACACGATGATCTCGACCCACTTGCGACCCAGATCATTGAATCTCAGCCGTCCATTCCGAATTCGCACCACGGCGAACCGCCGTTCTCTTTGCCGGAAATCGTGCTCTTCCGGTCGCCGTCTCCGTCTTCCCCAAGTCACTCGTCCTCTGATGATTCACCGACTCACTCCACTCGGATGAGTCAACTTGTTCAGAACCCTACATCGACTTCGCAAAATCTTCACGAACCGCCTCTCTATATCTCGCCGGAGCCTCACATATCGGCTCAGTTTTATACCTTTAATCCCGAGTCGCACTCGTTGATGATCCGTTGTATTCTCGAGCACCGCCTTGCGACGCCGAGTGAGATACGCGCCGCCACATCGCGTTCCGTTCTCAAGTCGTGGAGGACCGTGTGGAAGGACCGGAACGAGGACACTGCGTATCTGACGGCATGGAAAAGAATCCAGGACAAGCTTACGGCAACGGTCGACGAAAACGGTAACGAATTTCTCTGTTTCAAGAACAATACTCAGCAGTTCGTTTCGCATATTAGTCAATGGCAGGACATTGTTACGAGTTTTCATGGAGATACGGATTTGAAACATTTAGGGTTGAAGGAAACCATAGAGAGAATTAAGCAGGTTTGGACTGTAGGTGCTAAATTTTATGGGATTCCCGAGAGTTACATTAGGGTTTGTGTTGCTGCTTGCCCTGTTTGTAATTCAGCGTCCTCGGCGTCAGGTTCGAGGAGTAAACGGCGGAGGTTTGAGTATACAGATACTCTTGAGGTGCCTGCAAAGGAAGTGCCACACAAGCTTCAGCAATTGGCTGCTAAACATAAGGTGGTGCTTTGTATTAGGCAGAAGTATATTAGGTATAAGCCTTTCATGGCGGAGGTTAAGGATTATGCTTGTCATAGGGCAGGGGAACCTGCTACGAAGAAGTCGAAGATTTTGAAAAGGGAGCCATATGCATCGAAGAGATGCGGGTGTGGATTTCGTATCCGGGCCATTGTACCCATTACAAATTACAACGAGAAGGATAAGACATTTGTGTATCAGGATGAGGGTGTGGCTGTGTTCAAATTGTATGCTGTCCATTCAGGGCATGAACCTGGGCCACTGGATGGAAATGCGAGAATTATGCATCGTGTGATCGGACACAAAGGTGGCCTGTTAATGGATCATGATACAGTGTATGGGGTGAATGATGAAATGGAAAATGAAGGATTTAGAATTATGGGGAAGGATGAAGCAGATTTGCAGCTTTCAATCTTGCAGCAGGTGCATGAGGTGAGAAATGAGCTTGACTTGTTAGAAGGGAAACTTGCAAAGGTTCCACACGAGCTATTGGGTTCAGTGTCTCGCGATTTGTTCGACGTTTTAAGTAGACTTAGGAGTACAAGGGAGGAGAAATTGGACCCGATCGATCTGCTTGCAGATAAGCCTCATTCAGATGATGTTTTAGATGGGGAGAATGATTTGGCTCATTGGAGCAATCACCATCATGAACGTTTATATGGGGATGGTAAAGACAGTGAATTGATTGAGGACGATGTAGACAGTTTTGGTCACTCCCTTCGAGATGTTGTTCCTTGGGAGGACCATATGAGGGCAGACTGTAGAAATCAGAAAGAACTGACAAGCGAGCCTTGCAAATCCGAAAGATGGTTTAAATGCACTGACTTCAATGATAAAAGCATTCTTGGCTGTGAGGATACAAAACTAATTAAGCCCATGAGACATGATGAGAGCATGGTGGCAGATGTAGGTCTTGTCGGTATACATGTTGACGGATTTTACCCAGAGAACCCTAAATGGTTGTATAGACTGCTATCTGTACAAATCTCCGGTCGCTCACCTCCAGAAGAAAGATTAATACTGCAAAGCCTTTGTACAGAAAGTAAGCAGGAGTTCTACCCGCCCGGTGACCAGTTTCGTCGGGTTTGGAAGGCTGAAATGAAAGAGCTATCCAACCAAGACTATTTAGGGAGGTTCAATTGGCCTGATGGTGCTCTTAAATGGAACCTCAGTTGCATCAGCTACCTTCAGAAGAAGCTCTACTGGCACAATTCTTCTTCGTCTAGGAAAAAAGACTTTAAGCTTTGCTTAGCTTTTCCTGAAAGAACGCAAGCAAGCAAGGCTGAGATGAGCTCGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGCACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCGAAGTTGCAATCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGAGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCGACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAAGGAGCCTAA 2853 47.14 MNPSKIEEDLFHHHRLHDDLDPLATQIIESQPSIPNSHHGEPPFSLPEIVLFRSPSPSSPSHSSSDDSPTHSTRMSQLVQNPTSTSQNLHEPPLYISPEPHISAQFYTFNPESHSLMIRCILEHRLATPSEIRAATSRSVLKSWRTVWKDRNEDTAYLTAWKRIQDKLTATVDENGNEFLCFKNNTQQFVSHISQWQDIVTSFHGDTDLKHLGLKETIERIKQVWTVGAKFYGIPESYIRVCVAACPVCNSASSASGSRSKRRRFEYTDTLEVPAKEVPHKLQQLAAKHKVVLCIRQKYIRYKPFMAEVKDYACHRAGEPATKKSKILKREPYASKRCGCGFRIRAIVPITNYNEKDKTFVYQDEGVAVFKLYAVHSGHEPGPLDGNARIMHRVIGHKGGLLMDHDTVYGVNDEMENEGFRIMGKDEADLQLSILQQVHEVRNELDLLEGKLAKVPHELLGSVSRDLFDVLSRLRSTREEKLDPIDLLADKPHSDDVLDGENDLAHWSNHHHERLYGDGKDSELIEDDVDSFGHSLRDVVPWEDHMRADCRNQKELTSEPCKSERWFKCTDFNDKSILGCEDTKLIKPMRHDESMVADVGLVGIHVDGFYPENPKWLYRLLSVQISGRSPPEERLILQSLCTESKQEFYPPGDQFRRVWKAEMKELSNQDYLGRFNWPDGALKWNLSCISYLQKKLYWHNSSSSRKKDFKLCLAFPERTQASKAEMSSRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMRHIGASLFPCVPKGA 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2110702 2119023 - ClCG05G002190.2 Cla05g00235 271725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00235 950 MobiDBLite consensus disorder prediction 32 90 - -
Cla05g00235 950 Pfam Lateral organ boundaries (LOB) domain 743 841 IPR004883 -
Cla05g00235 950 ProSiteProfiles LOB domain profile. 742 844 IPR004883 -
Cla05g00235 950 PANTHER EXPRESSED PROTEIN 1 628 - -
Cla05g00235 950 MobiDBLite consensus disorder prediction 52 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00235 Cla-Chr5:2110702 Cla06g00032 Cla-Chr6:375668 4.83E-48 dispersed
Cla07g00324 Cla-Chr7:3771777 Cla05g00235 Cla-Chr5:2110702 3.10E-41 transposed
Cla05g00235 Cla-Chr5:2110702 Cla06g00031 Cla-Chr6:357930 1.71E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60995 PF03195 LOB 1.80E-35 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00235 - - csv:101217172 1211.82