Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00236 ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTGCCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAGTGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTTGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTACAGTCCCGAGCACGGCACTAGCCACGACTGTGCCGGCTTCGAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCCGGGTCGTTAAAACCGGCCAGTTTTGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCAGGCTAA 1026 52.24 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVTVPSTALATTVPASNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNAAVHSLQEPRNSATDINISLPG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2141901 2146140 + ClCG05G002200.1 Cla05g00236 271726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00236 341 MobiDBLite consensus disorder prediction 271 303 - -
Cla05g00236 341 MobiDBLite consensus disorder prediction 248 341 - -
Cla05g00236 341 MobiDBLite consensus disorder prediction 18 71 - -
Cla05g00236 341 CDD DUF296 131 244 IPR005175 -
Cla05g00236 341 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
Cla05g00236 341 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 340 - -
Cla05g00236 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Cla05g00236 341 Gene3D - 131 260 - -
Cla05g00236 341 MobiDBLite consensus disorder prediction 311 341 - -
Cla05g00236 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 340 IPR039605 GO:0003680
Cla05g00236 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00236 Cla-Chr5:2141901 Cla11g00044 Cla-Chr11:568389 6.53E-85 dispersed
Cla01g00342 Cla-Chr1:3726056 Cla05g00236 Cla-Chr5:2141901 1.72E-95 wgd
Cla05g00236 Cla-Chr5:2141901 Cla05g00810 Cla-Chr5:7912041 3.37E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00236 - - csv:101212918 561.992