Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00238 ATGGCTCGCAACAGGGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCTGAGGTCGAAAAAGTGTGTTCAATGCTAGTAGAGAAGAAGCTAATCTACAACAAATATGATGAAGTAGGCATTGTTCTATTTGGAACTGAAGACACTAAAAATGAGCTGACGGAGGAAGTTGGCGGATATCAGCATGTGGTGGTTTTACAGAACATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAATGGATCCCTCGAGGGACTGTTTCCGGTGATTATGCTTTATTCTCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATGAGAATGGATAGTGTTGTCGTGAGAGGGAGGTTCAGTCAGAATGCAGATGAGAAAACGATGGATGAAAATGACATTCTTTTAAACATATTTTCAGAGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGAAGTATAGCGCCCGTGACAATTTTTAGAGGTGATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGAGAAGTTTCCTACTTTGAAAAGATATTCTGATAAAGCACCTCCAACTGATAAATTTGCCACACATGAAATCAAGGTAGATTATGAGTACAAAAGCGTCGAAGAACCTAGTAAGGTAGTGCCGCCAGAACATAGGATTAAAGGTTATCGGTATGGACCTCAAGTGGTTCCTATATCGACTGCTGAATGGGATGCAGTGAAGTTCAAACCAGAAAAGAGCGTGAAGCTACTCGGATTTACAAATGCATCAAATATAATGAGGCACTACTACATGAAAGATGTCAATGTCTTCATTGCCGAACCGAGCAATAAAAGAGCCATTGTTGCGGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCAATAGTGCGATGCGTTTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGTGTCTTAACACCCAATATATCCAAGAAGGACGGTATTGCCGATTCGCTATACTTCAATGTACTTCCCTTTGCGGAGGACGTTCGGGAATTCCAATTTCCATCTTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAGCAACAGGCAGCAGATGACTTGGTTAAGACGCTTGATCTTGCACCAGCTGGACGAGAGGAAATTCTACAACCGGATTTCACACCAAATCCTGTTTTGGAGCGCTTCTATCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAAAAGATTACTGAGCCAGATCCGGACTTGTTTTCTCAAAACAAATATGTTATCGATACATTCCATAGAAAATTTGAACTCAAGGAGAACCCAAAGCTAAAGAAACCGAGAAGGCATTATTTACGTGAAAAAGCATCCGGTTCAAGCGATAAAGAGGATAATGATGAGATTTCTGCTGAAATTGTTGAATCTGTTTCCAACATGCCTATAGTCAAGGTCGAAAAGATTGGAGATTCAACTCCACTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAGTGGATCAGTAAAGCAATCTGTGGCATGAGAAACAAAATATTCGATCTTGTCGAGAACTCCTCTGATGGTGATAACTGTCTGAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTCCTCCGTCATCTCCGTAAATTTTGTCCGGAAAATAACCTCCATAGTTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCCGCTGACAGCGTCTCATTCTGTTTCTTCTTCTCGTTGACGATCATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGTCAATATGCCTTGGGAGATGAAGCTGATGTGTTTCTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAAAAGTTACCAGAATTCCAAGCATCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG 2634 41.91 MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKWIPRGTVSGDYALFSIKEPYEGTKEDQVTTIAQQMTKHGMRMDSVVVRGRFSQNADEKTMDENDILLNIFSEKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEIKVDYEYKSVEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISKKDGIADSLYFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQQAADDLVKTLDLAPAGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSQNKYVIDTFHRKFELKENPKLKKPRRHYLREKASGSSDKEDNDEISAEIVESVSNMPIVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAICGMRNKIFDLVENSSDGDNCLKAIEYLRALRKGCIIEQEPKQFNDFLRHLRKFCPENNLHSFCEFLASQQISLISKEEAADSVSFCFFFSLTIMDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPERQPDALH 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2155011 2167754 + ClCG05G002220.2 Cla05g00238 271728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00238 877 Gene3D - 504 643 IPR036494 -
Cla05g00238 877 PANTHER X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5 4 640 - -
Cla05g00238 877 Pfam Ku C terminal domain like 536 640 IPR014893 -
Cla05g00238 877 SUPERFAMILY GST C-terminal domain-like 751 875 IPR036282 -
Cla05g00238 877 Pfam Ku70/Ku80 C-terminal arm 422 503 IPR005160 GO:0003677|GO:0003678|GO:0006303
Cla05g00238 877 Gene3D von Willebrand factor, type A domain 1 172 IPR036465 -
Cla05g00238 877 Gene3D Glutaredoxin 673 749 - -
Cla05g00238 877 PANTHER KU AUTOANTIGEN DNA HELICASE 4 640 - -
Cla05g00238 877 Pfam Ku70/Ku80 beta-barrel domain 196 401 IPR006164 GO:0003677|GO:0006303
Cla05g00238 877 TIGRFAM maiA: maleylacetoacetate isomerase 673 875 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cla05g00238 877 Gene3D - 752 877 - -
Cla05g00238 877 SFLD Glutathione Transferase (cytosolic) 671 858 IPR040079 -
Cla05g00238 877 Gene3D - 186 389 IPR016194 -
Cla05g00238 877 SUPERFAMILY SPOC domain-like 185 488 IPR016194 -
Cla05g00238 877 SMART ku_4 248 389 IPR006164 GO:0003677|GO:0006303
Cla05g00238 877 SUPERFAMILY C-terminal domain of Ku80 506 640 IPR036494 -
Cla05g00238 877 Pfam Glutathione S-transferase, N-terminal domain 673 749 IPR004045 -
Cla05g00238 877 CDD GST_N_Zeta 672 743 IPR034333 -
Cla05g00238 877 SFLD Main (cytGST) 671 858 - -
Cla05g00238 877 Gene3D - 393 489 - -
Cla05g00238 877 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 669 750 IPR004045 -
Cla05g00238 877 SUPERFAMILY vWA-like 4 202 IPR036465 -
Cla05g00238 877 SUPERFAMILY Thioredoxin-like 669 753 IPR036249 -
Cla05g00238 877 Pfam Ku70/Ku80 N-terminal alpha/beta domain 8 84 IPR005161 -
Cla05g00238 877 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 755 877 IPR010987 -
Cla05g00238 877 MobiDBLite consensus disorder prediction 492 511 - -
Cla05g00238 877 CDD KU80 186 487 IPR024193 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0006310|GO:0042162|GO:0043564
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00238 K10885 XRCC5, KU80, G22P2; ATP-dependent DNA helicase 2 subunit 2 - csv:101217407 1146.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00034 Cla-Chr2:404842 Cla05g00238 Cla-Chr5:2155011 4.40E-12 dispersed
Cla02g00037 Cla-Chr2:424156 Cla05g00238 Cla-Chr5:2155011 8.85E-83 dispersed
Cla05g00238 Cla-Chr5:2155011 Cla05g00387 Cla-Chr5:3515056 6.25E-09 dispersed
Cla05g00238 Cla-Chr5:2155011 Cla05g02445 Cla-Chr5:35895016 9.11E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00568 . 234 442 Glutathione S-transferase Gene Family AT4G02520 57.1 7.2e-64 240.7
Cla09g00567 . 1 220 Glutathione S-transferase Gene Family AT4G02520 51.6 2.3e-54 209.1
Cla09g00566 . 47 236 Glutathione S-transferase Gene Family AT4G02520 54.5 5.2e-54 208.0
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT2G02930 57.3 2.1e-63 239.2
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT2G02930 56.5 6.5e-57 217.6
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT2G02930 52.2 2.1e-55 212.6
Cla09g00566 . 52 241 Glutathione S-transferase Gene Family AT1G02950 51.2 9.3e-50 194.1
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02930 54.8 2.5e-61 232.3
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02930 51.9 4.3e-53 204.9
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02920 55.2 2.3e-62 235.7
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT1G02920 50.2 2.3e-54 209.1
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02920 54.0 3.0e-54 208.8
Cla09g00568 . 233 448 Glutathione S-transferase Gene Family AT2G47730 57.6 1.0e-67 253.8
Cla09g00567 . 1 225 Glutathione S-transferase Gene Family AT2G47730 51.8 2.8e-57 219.2
Cla09g00566 . 50 241 Glutathione S-transferase Gene Family AT2G47730 53.5 1.8e-56 216.5
Cla09g00568 . 1 208 Glutathione S-transferase Gene Family AT3G62760 58.2 7.4e-72 267.3
Cla04g00746 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 1.4e-57 219.9
Cla05g00265 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.4e-57 219.9
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.7e-88 320.9
Cla01g00840 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.5e-67 253.1
Cla07g01008 . 102 255 Glutathione S-transferase Gene Family AT1G78380 59.9 2.3e-49 192.6
Cla07g01007 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.6e-80 294.3
Cla01g00840 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 1.4e-62 236.5
Cla07g01008 . 103 242 Glutathione S-transferase Gene Family AT1G78370 55.7 2.3e-41 166.0
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.5e-80 295.4
Cla01g00840 . 4 218 Glutathione S-transferase Gene Family AT1G78340 53.5 6.3e-63 237.7
Cla07g01008 . 98 242 Glutathione S-transferase Gene Family AT1G78340 56.6 1.1e-43 173.7
Cla07g01007 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.8e-61 230.7
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.4e-91 330.1
Cla01g00840 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 4.3e-67 251.5
Cla07g01008 . 113 242 Glutathione S-transferase Gene Family AT1G17180 63.8 1.9e-46 183.0
Cla07g01007 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.9e-75 279.3
Cla07g01007 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.2e-72 270.0
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.4e-71 264.2
Cla01g00840 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.3e-63 240.0
Cla07g01008 . 115 243 Glutathione S-transferase Gene Family AT1G53680 58.0 1.3e-39 160.2
Cla02g00037 . 88 254 Glutathione S-transferase Gene Family AT2G02390 68.3 1.0e-61 233.4
Cla05g00238 . 712 875 Glutathione S-transferase Gene Family AT2G02390 51.5 6.8e-45 177.6
Cla02g00037 . 45 257 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Cla05g00238 . 669 874 Glutathione S-transferase Gene Family AT2G02380 53.1 1.4e-57 219.9
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41210 65.4 4.5e-86 314.7
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41240 63.7 6.6e-83 305.4
Cla02g01351 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.6e-80 295.0
Cla10g01965 . 392 610 Glutathione S-transferase Gene Family AT5G02780 64.4 9.2e-76 280.4
Cla02g01351 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.2e-85 313.5
Cla10g01965 . 384 610 Glutathione S-transferase Gene Family AT5G02790 65.5 7.7e-83 303.9
Cla02g01351 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.8e-82 301.6
Cla02g01324 . 3 261 Glutathione S-transferase Gene Family AT1G19570 54.2 7.2e-72 267.3
Cla05g01223 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.5e-72 266.9
Cla02g01324 . 3 260 Glutathione S-transferase Gene Family AT1G75270 57.9 8.8e-78 287.0
Cla05g01223 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 4.1e-75 278.1
Cla05g01223 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.4e-101 366.3
Cla11g01560 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.9e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010606 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00238 Cla_Chr05 FPKM 0.481481 0.0 0.848715 0.187856 0.512899 0.535915 0.789154 0.615058 0.286684 0.291748