Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00238 ATGGCTCGCAACAGGGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCTGAGGTCGAAAAAGTGTGTTCAATGCTAGTAGAGAAGAAGCTAATCTACAACAAATATGATGAAGTAGGCATTGTTCTATTTGGAACTGAAGACACTAAAAATGAGCTGACGGAGGAAGTTGGCGGATATCAGCATGTGGTGGTTTTACAGAACATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAATGGATCCCTCGAGGGACTGTTTCCGGTGATTATGCTTTATTCTCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATGAGAATGGATAGTGTTGTCGTGAGAGGGAGGTTCAGTCAGAATGCAGATGAGAAAACGATGGATGAAAATGACATTCTTTTAAACATATTTTCAGAGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGAAGTATAGCGCCCGTGACAATTTTTAGAGGTGATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGAGAAGTTTCCTACTTTGAAAAGATATTCTGATAAAGCACCTCCAACTGATAAATTTGCCACACATGAAATCAAGGTAGATTATGAGTACAAAAGCGTCGAAGAACCTAGTAAGGTAGTGCCGCCAGAACATAGGATTAAAGGTTATCGGTATGGACCTCAAGTGGTTCCTATATCGACTGCTGAATGGGATGCAGTGAAGTTCAAACCAGAAAAGAGCGTGAAGCTACTCGGATTTACAAATGCATCAAATATAATGAGGCACTACTACATGAAAGATGTCAATGTCTTCATTGCCGAACCGAGCAATAAAAGAGCCATTGTTGCGGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCAATAGTGCGATGCGTTTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGTGTCTTAACACCCAATATATCCAAGAAGGACGGTATTGCCGATTCGCTATACTTCAATGTACTTCCCTTTGCGGAGGACGTTCGGGAATTCCAATTTCCATCTTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAGCAACAGGCAGCAGATGACTTGGTTAAGACGCTTGATCTTGCACCAGCTGGACGAGAGGAAATTCTACAACCGGATTTCACACCAAATCCTGTTTTGGAGCGCTTCTATCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAAAAGATTACTGAGCCAGATCCGGACTTGTTTTCTCAAAACAAATATGTTATCGATACATTCCATAGAAAATTTGAACTCAAGGAGAACCCAAAGCTAAAGAAACCGAGAAGGCATTATTTACGTGAAAAAGCATCCGGTTCAAGCGATAAAGAGGATAATGATGAGATTTCTGCTGAAATTGTTGAATCTGTTTCCAACATGCCTATAGTCAAGGTCGAAAAGATTGGAGATTCAACTCCACTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAGTGGATCAGTAAAGCAATCTGTGGCATGAGAAACAAAATATTCGATCTTGTCGAGAACTCCTCTGATGGTGATAACTGTCTGAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTCCTCCGTCATCTCCGTAAATTTTGTCCGGAAAATAACCTCCATAGTTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCCGCTGACAGCGTCTCATTCTGTTTCTTCTTCTCGTTGACGATCATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGTCAATATGCCTTGGGAGATGAAGCTGATGTGTTTCTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAAAAGTTACCAGAATTCCAAGCATCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG 2634 41.91 MARNREILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKWIPRGTVSGDYALFSIKEPYEGTKEDQVTTIAQQMTKHGMRMDSVVVRGRFSQNADEKTMDENDILLNIFSEKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEIKVDYEYKSVEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISKKDGIADSLYFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQQAADDLVKTLDLAPAGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSQNKYVIDTFHRKFELKENPKLKKPRRHYLREKASGSSDKEDNDEISAEIVESVSNMPIVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAICGMRNKIFDLVENSSDGDNCLKAIEYLRALRKGCIIEQEPKQFNDFLRHLRKFCPENNLHSFCEFLASQQISLISKEEAADSVSFCFFFSLTIMDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPERQPDALH 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2155011 2167754 + ClCG05G002220.2 Cla05g00238 271728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00238 877 Gene3D - 504 643 IPR036494 -
Cla05g00238 877 PANTHER X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5 4 640 - -
Cla05g00238 877 Pfam Ku C terminal domain like 536 640 IPR014893 -
Cla05g00238 877 SUPERFAMILY GST C-terminal domain-like 751 875 IPR036282 -
Cla05g00238 877 Pfam Ku70/Ku80 C-terminal arm 422 503 IPR005160 GO:0003677|GO:0003678|GO:0006303
Cla05g00238 877 Gene3D von Willebrand factor, type A domain 1 172 IPR036465 -
Cla05g00238 877 Gene3D Glutaredoxin 673 749 - -
Cla05g00238 877 PANTHER KU AUTOANTIGEN DNA HELICASE 4 640 - -
Cla05g00238 877 Pfam Ku70/Ku80 beta-barrel domain 196 401 IPR006164 GO:0003677|GO:0006303
Cla05g00238 877 TIGRFAM maiA: maleylacetoacetate isomerase 673 875 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cla05g00238 877 Gene3D - 752 877 - -
Cla05g00238 877 SFLD Glutathione Transferase (cytosolic) 671 858 IPR040079 -
Cla05g00238 877 Gene3D - 186 389 IPR016194 -
Cla05g00238 877 SUPERFAMILY SPOC domain-like 185 488 IPR016194 -
Cla05g00238 877 SMART ku_4 248 389 IPR006164 GO:0003677|GO:0006303
Cla05g00238 877 SUPERFAMILY C-terminal domain of Ku80 506 640 IPR036494 -
Cla05g00238 877 Pfam Glutathione S-transferase, N-terminal domain 673 749 IPR004045 -
Cla05g00238 877 CDD GST_N_Zeta 672 743 IPR034333 -
Cla05g00238 877 SFLD Main (cytGST) 671 858 - -
Cla05g00238 877 Gene3D - 393 489 - -
Cla05g00238 877 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 669 750 IPR004045 -
Cla05g00238 877 SUPERFAMILY vWA-like 4 202 IPR036465 -
Cla05g00238 877 SUPERFAMILY Thioredoxin-like 669 753 IPR036249 -
Cla05g00238 877 Pfam Ku70/Ku80 N-terminal alpha/beta domain 8 84 IPR005161 -
Cla05g00238 877 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 755 877 IPR010987 -
Cla05g00238 877 MobiDBLite consensus disorder prediction 492 511 - -
Cla05g00238 877 CDD KU80 186 487 IPR024193 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0006310|GO:0042162|GO:0043564
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00034 Cla-Chr2:404842 Cla05g00238 Cla-Chr5:2155011 4.40E-12 dispersed
Cla02g00037 Cla-Chr2:424156 Cla05g00238 Cla-Chr5:2155011 8.85E-83 dispersed
Cla05g00238 Cla-Chr5:2155011 Cla05g00387 Cla-Chr5:3515056 6.25E-09 dispersed
Cla05g00238 Cla-Chr5:2155011 Cla05g02445 Cla-Chr5:35895016 9.11E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00238 K10885 - csv:101217407 1146.34