Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00252 ATGCCCTTCCCCGTCGCTACCTTTCTACTCCTCTTCTTACCCCTGGTAGTGGTGGCTTCCTCTATTTCTTCGTTGCCCGAGCTGGACCCGGTTCGGTTCGCCCAGACCGGGGTTGCGGAAGCCAGAACCGAAATAGGTAAGTTAAAACGACGTCGATTTGGGCTTGGCGATTGCTCTACGCTCTACGAGGAGGCGGACTGGCGGCTCGCCGGGATGTTGGTTGGAGAGAATTATACGGCGGAAGATGCTCGGGCGTGGCTTAGCGCCGCCGTGGCTAACCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTTGGTGCCGCGACGGCGGTGGAATATGGGAATAACTTGACCGTGATGCTCACCGGAGCTCTGCATTTATACGACAAGATTGCTGCTGTGGAGAAGCGGAAGGGAAGGGAAGTAGTGAAGAAACAGAAATGGAGAGAAAACAGAGGAATGGACTTGGCGAAGTGGAATCCGGTGACCTCGAAGGCAGACTACGTGGTGGCGAAAGACGGGTCCGGCACCCACACAACCATAAACGGGGCGGTGGCGACTCTGGCGAGGACTGGACGGAGACGGCGGGGGGAGAGAATTGTGATATACGTGAAAGCCGGTGTTTACAAGGAAAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGGTTGTTGGTGACGGCGCAGACAAAACCATCGTCACCGGTAGCCGCAACGTGCCCGACGGTGCCACCACTTATAACTCAGCTACATTTGCAGGTGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACTTTCGAGAACACAGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCAGACCTTGCCGTCGTATATCGGTGCGCAATAAAAGGTTATCAGGACACGCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCAAATCTACGGCACCATCGATTTCATTTTCGGGAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACGACCGATTCGCCACCAGGCTAACATGATCACCGCCCAAGGTCGCGACGATCCGGCCGAGCCCACCGGAATTTCCATCCTCAACTCCAGAGTCCAGCCGGCGCCGGATTTCGCACCCGTAAAGGCTCAATATAGAACCTACCTCGGCCGCCCGTGGAAGCGGTTTTCGAGGACGGTGGTTATGGCGACAGATTTGGACGGATTGATCGATCCGAAAGGGTGGGGAGAATGGAGGGGGGATTTTGCGATTTCGACTTTGTTTTATGCAGAGTTTAAGAACAGGGGCGGCGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGGTTTCACGTCCTCCATAGCGCGGAGGAGGCGCGACCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGCTTGGATTCCGGCCACCGGCGTACCCTTCGAGGCGGGCGTTTGA 1449 56.18 MPFPVATFLLLFLPLVVVASSISSLPELDPVRFAQTGVAEARTEIGKLKRRRFGLGDCSTLYEEADWRLAGMLVGENYTAEDARAWLSAAVANHRSCLDGLEEVGAATAVEYGNNLTVMLTGALHLYDKIAAVEKRKGREVVKKQKWRENRGMDLAKWNPVTSKADYVVAKDGSGTHTTINGAVATLARTGRRRRGERIVIYVKAGVYKENVEIGIQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFAGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNSAAVLQNCEIFVRRPIRHQANMITAQGRDDPAEPTGISILNSRVQPAPDFAPVKAQYRTYLGRPWKRFSRTVVMATDLDGLIDPKGWGEWRGDFAISTLFYAEFKNRGGGSSTRFRVNWPGFHVLHSAEEARPFTVAEFLHGGAWIPATGVPFEAGV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2297068 2300363 - ClCG05G002430.1 Cla05g00252 271742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00252 482 Gene3D - 160 482 IPR012334 -
Cla05g00252 482 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 130 IPR035513 -
Cla05g00252 482 Pfam Pectinesterase 166 467 IPR000070 GO:0030599|GO:0042545
Cla05g00252 482 Pfam Plant invertase/pectin methylesterase inhibitor 35 107 IPR006501 GO:0004857
Cla05g00252 482 PANTHER PECTINESTERASE 9 481 - -
Cla05g00252 482 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 9 481 - -
Cla05g00252 482 SUPERFAMILY Pectin lyase-like 162 480 IPR011050 -
Cla05g00252 482 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 114 IPR035513 -
Cla05g00252 482 ProSitePatterns Pectinesterase signature 2. 315 324 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00252 Cla-Chr5:2297068 Cla01g02159 Cla-Chr1:35741531 5.19E-133 dispersed
Cla05g00252 Cla-Chr5:2297068 Cla05g00253 Cla-Chr5:2312249 4.04E-124 tandem
Cla05g00252 Cla-Chr5:2297068 Cla05g00797 Cla-Chr5:7768370 3.11E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00252 K01051 - csv:101217635 790.801