Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00253 ATGGGAAGGCATTCGACCACCTTTGTTGTTGTTCTTATTGTTCTTCTTATTCCGACCGAGATTTTTTGTTATTCCGAAAAAGAAATAAAACGTTGGTGTAGCCAAACGCCATATCCAGCTCCATGTGAGGAATTTCTCAAAACCAAAGCCTTAACAAACAAATCTCCAATAGTCAATAAATCCCATTTCTTTGAAATCTTAGTCCAAACGGCACTCGAACGTGCCGTTTCGGCCCATAAAAACGCTCTTTCTCTCGGCCCAAAATGCCGAAATGCCAAAGAAAAAACCGCATGGACTGATTGTGTTGACCTCTACGACCAAATCATAACCCGCCTCAACCGAACCGCCGACCGCTGCTCCCCGGTTGACGCACAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGAGGAGCTCGGGGTTTCGGCTTTCGGCTACTCATTGACGGCCAATAATGTTTCAAAGCTGATTAGCGATGGGTTGTCGGTGAATAAACCGCCGTCGCCGGAGGGGTATGAACCGCAGACCATGGCGGAGGGGTTCCCGACGTGGGTTAGGCCCGGTGACCGGAAATTGCTGCAGGCGGGGTCTCCGAAGGCGAACGTCGTGGTGGCGAAGGATGGGTCAGGGAATTTTCAGACGGTGAAGGAGGCGGTGGCCGCCGCGAAGGGCGGCGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGCGAGAATGTGGAGATTAAGGCTAAGAATGTCATGTTAATCGGAGATGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCGCGAGACATAACTTTCAGAAACACAGCCGGGGCAAAGAACCACCAGGCGGTGGCGCTCCGATCGGGTTCCGATCTCTCCGTCTTCTACCGTTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGATTCCAACATCATCGCTCGTGATCCTCCGAACAAAACCATCACACTCACCGCCCAAGGCCGCACCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCAGAGTCACCTCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCGTGGAAGCAGTACTCGCGGACGGTTTTTATGAAATCGTCGATCGGAGGATTCATCAGTCCGGCGGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTGTATTACGGCGAGTATATGAATACCGGTCCGGGAGCGTCGACGGCGAACCGAGTGAAATGGAAGGGTTATCATGTGATAACCAGTGCGGCGGAGGCTTCAAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTGA 1530 53.59 MGRHSTTFVVVLIVLLIPTEIFCYSEKEIKRWCSQTPYPAPCEEFLKTKALTNKSPIVNKSHFFEILVQTALERAVSAHKNALSLGPKCRNAKEKTAWTDCVDLYDQIITRLNRTADRCSPVDAQTWLSAALTALETCRTGFEELGVSAFGYSLTANNVSKLISDGLSVNKPPSPEGYEPQTMAEGFPTWVRPGDRKLLQAGSPKANVVVAKDGSGNFQTVKEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITLTAQGRTDPNQNTGISIHNCRVTSAGGLSGVKAYLGRPWKQYSRTVFMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2312249 2317048 + ClCG05G002440.1 Cla05g00253 271743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00253 509 CDD PMEI-like_3 32 174 - -
Cla05g00253 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599|GO:0042545
Cla05g00253 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cla05g00253 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Cla05g00253 509 PANTHER PECTINESTERASE 10 508 - -
Cla05g00253 509 PANTHER PECTINESTERASE 10 508 - -
Cla05g00253 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Cla05g00253 509 SMART PMEI_2 24 169 IPR006501 GO:0004857
Cla05g00253 509 Gene3D - 202 509 IPR012334 -
Cla05g00253 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Cla05g00253 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 161 IPR006501 GO:0004857
Cla05g00253 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 165 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00469 Cla-Chr1:5025842 Cla05g00253 Cla-Chr5:2312249 0 dispersed
Cla05g00253 Cla-Chr5:2312249 Cla05g00797 Cla-Chr5:7768370 0 dispersed
Cla05g00252 Cla-Chr5:2297068 Cla05g00253 Cla-Chr5:2312249 4.04E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00253 K01051 - csv:101217552 926.006