Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00274 ATGGCGGGCTTAGATTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCACCGTTCCGTCGATCTTCACCTGCAGCATCCGACGGATGTAGACGACAGTTCCGACCACCATCCGAACTCCGGCGGCGAAATCGTCGCCCGGCGGTCCAGGGGCAGACCGCCCGGTTCTAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTCCGAGCCCACATCTTGGAAGTCAACTCCGGTTGCGATGTCTTTGACTCCGTCGCCACTTATGCTCGGAAGCGCCAGCGTGGCATCTGCATCTTGAGCGGCACCGGCGCCGTCACCAACGTTACCTTACGGCAACCTGCATCAGCCGGTGCCGTTGTCACTCTCCCTGGCAGGTTCGAGATACTGTCTTTGTCGGGATCGTTCTTGCCGCCACCGGCTCCACCGGGAGCTACGAGTTTGACTATCTTCCTTGCGGGTGGGCAAGGACAAATCGTCGGCGGGAATGTTGTTGGACCTTTGATTGCTTCTGGACCGGTGATCGTCATTGCGTCGTCGTTTACCAATGTTGCTTACGAGAGGTTGCCGTTGGACGAGGAGGAACAACCGTCGAACAGTGGTGGTGGGAGCCTTAGCAACCCGTTTCCGGACCCATCGGCCGGGTTGCCGTTCTTTAATCTACCGTCGAGCATGGCGGGGAATCAAAATCAGCTGCCGGTGGACGGATGGGGTGGAGGAAACTCCGGTGGGAGAGCATCTTATTGA 765 56.86 MAGLDLGSASHFVHQLQHRSVDLHLQHPTDVDDSSDHHPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNSGCDVFDSVATYARKRQRGICILSGTGAVTNVTLRQPASAGAVVTLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEEEQPSNSGGGSLSNPFPDPSAGLPFFNLPSSMAGNQNQLPVDGWGGGNSGGRASY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2486749 2487680 + ClCG05G002640.1 Cla05g00274 271764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00274 254 ProSiteProfiles PPC domain profile profile. 72 214 IPR005175 -
Cla05g00274 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 254 - -
Cla05g00274 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
Cla05g00274 254 MobiDBLite consensus disorder prediction 198 254 - -
Cla05g00274 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 254 IPR014476 GO:0003680
Cla05g00274 254 MobiDBLite consensus disorder prediction 228 242 - -
Cla05g00274 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 189 IPR005175 -
Cla05g00274 254 MobiDBLite consensus disorder prediction 27 65 - -
Cla05g00274 254 CDD DUF296 76 185 IPR005175 -
Cla05g00274 254 MobiDBLite consensus disorder prediction 27 44 - -
Cla05g00274 254 Gene3D - 75 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00339 Cla-Chr1:3653470 Cla05g00274 Cla-Chr5:2486749 5.91E-89 dispersed
Cla05g00231 Cla-Chr5:2071941 Cla05g00274 Cla-Chr5:2486749 3.90E-74 dispersed
Cla05g00274 Cla-Chr5:2486749 Cla06g00029 Cla-Chr6:337812 4.93E-69 dispersed
Cla08g01168 Cla-Chr8:24555865 Cla05g00274 Cla-Chr5:2486749 2.95E-53 dispersed
Cla02g00325 Cla-Chr2:3145490 Cla05g00274 Cla-Chr5:2486749 6.99E-75 transposed
Cla06g01429 Cla-Chr6:27866233 Cla05g00274 Cla-Chr5:2486749 4.37E-76 transposed
Cla10g00170 Cla-Chr10:1791806 Cla05g00274 Cla-Chr5:2486749 3.39E-106 wgd
Cla05g00274 Cla-Chr5:2486749 Cla06g00062 Cla-Chr6:653729 1.68E-101 wgd
Cla05g00274 Cla-Chr5:2486749 Cla09g01139 Cla-Chr9:12782911 4.45E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00274 - - csv:101220959 439.113