Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00322 ATGGCGAAAGGGGATTGGGCGGTGAGGATGATGGGGATGGTGATGGGGGAAGATGGGCATGTAAGCCGCCGCCAAGGGTGGGGTGGGTGGGTGGAGGGAAGGGAAAGGGTGGATGGCGTTGGCGTGGGGAGTGGGGCTTGTTTGCGGGTGGAACAAAGTCAATATCGTAGAACCTCACCCGTCGATTACACACCAAAAACTTCCCACCATCTTCACCCTCTCCCTCCGCCCAATCTTTATCTCCAATTCGATTTCACCCGCTTCCGCCGATCGATTCAGATCCTGATCCACCGTTCTTCTCACCTAATGGAAGCAGCTGCTGGCGGCGCCGGTCCGGCGCCGTTTCTCATCAAGACCTACGATATGGTTGACGACTCAGCCACCGATGAGATCGTCTCCTGGACCTCTTCGAAGAAGAGTTTTGTGGTCTGGAATCCCCCTGAATTCGCCCGCCTTCTTCTCCCCACGTTTTTCAAGCACAGCAACTTCTCCAGCTTCATTCGGCAGCTTAATACCTATGTAAGTTTCTGGAGATTCCTCTTTCGCTCACCTCTATGTTCTTACTTTGGGTTTCGAAAGATTGATTCTGAGAAGTGGGAATTTGCAAATGAAGATTTCATAAAGGATCAAAAACATCTGCTGAAAAACATTCACCGTCGAAAACCAATTCACAGTCACAGTAATCCTCAAGGATCTCATGTAGATCCAGAAAGAGCTGCTTTTGAAGATGAAATAGAGAGGCTATCACGTGAAAAATCTACACTTGAAGCCAATATATCAAGGTTCAAACAGCAAAAATCGACTGCTAAACTTCAGTTGCAAGATCTAACGGTGAAGGTGGAAAGCATGGAAAAAAGGCAGAAGAATTTATTGGCATTTTTAGAAAAGGCTGTTCAGAATCCTTCTTTTGTTGAACATCTTGCTCGAAGGGTCGAGACTATGGACTTTACAGCATTTAAAAAAAAGAGACGACTACCTTCGGCTGATCTTTCACAGCCAGCCATAGAAAATAGTTTTTTGGATAACCATAGTAGTTCCAGATCTGAGTCTGGTAATATTTTTCATCAAGATTTTTCACATAAGCTGAGATTAGAAACTCCATGTGCATCAGATATCAACTTAATTTCACGCAGCACCCAGAGCTCAAATGAAGAAGGGGGAAGTTCACAAAGACTTATGTCAAAACTTGATGCTAGAGCTGTCCAAGAAAATCTTTATTTTGCAACTGAAACATTAGATCTCTCAGACACTGGGACATCGTTTATATTGAAGAGGGATTCATCTTTGTCAGCGAAATCACCTAACGACGAGAGTCCACGTCTACACTCATTGCAACCAAGTGTTAGTTCCAAAGAAGATGGAGAAAGTCACATCTCATGTCAATTGAATCTCACTCTCGCATCTTCTTCCCTGCGAATCAATGACACCGCTTGTTCAGTTCGAATGCCACAACTGGGTCAGAATATTCGAAAATCCCCAGATTCAAAGGTAAATTCAAATGGAAAAGAATCAGATGTGAGACTGTTCACTAAAAACATAAATCTCGACGAGGGGACTACTCCGGTTTGTCCTCAAGAGACCTTGAATAACAATCATGGACCTGCAGCCGCTCCTATCAGGGTCAATGATGTTTTTTGGGAACAGTTCCTTACTGAAAGACCGGGTTGTCCCGAAAGTGAAGAGGCAAGTTCTAATTACAGGGCAAATTTATATAAGGAGCCAGATGATGGGAGATCAGGCCTATCTCTTTGA 1752 44.46 MAKGDWAVRMMGMVMGEDGHVSRRQGWGGWVEGRERVDGVGVGSGACLRVEQSQYRRTSPVDYTPKTSHHLHPLPPPNLYLQFDFTRFRRSIQILIHRSSHLMEAAAGGAGPAPFLIKTYDMVDDSATDEIVSWTSSKKSFVVWNPPEFARLLLPTFFKHSNFSSFIRQLNTYVSFWRFLFRSPLCSYFGFRKIDSEKWEFANEDFIKDQKHLLKNIHRRKPIHSHSNPQGSHVDPERAAFEDEIERLSREKSTLEANISRFKQQKSTAKLQLQDLTVKVESMEKRQKNLLAFLEKAVQNPSFVEHLARRVETMDFTAFKKKRRLPSADLSQPAIENSFLDNHSSSRSESGNIFHQDFSHKLRLETPCASDINLISRSTQSSNEEGGSSQRLMSKLDARAVQENLYFATETLDLSDTGTSFILKRDSSLSAKSPNDESPRLHSLQPSVSSKEDGESHISCQLNLTLASSSLRINDTACSVRMPQLGQNIRKSPDSKVNSNGKESDVRLFTKNINLDEGTTPVCPQETLNNNHGPAAAPIRVNDVFWEQFLTERPGCPESEEASSNYRANLYKEPDDGRSGLSL 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2931206 2938034 + ClCG05G003060.1 Cla05g00322 271812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00322 583 PRINTS Heat shock factor (HSF) domain signature 115 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00322 583 PRINTS Heat shock factor (HSF) domain signature 153 165 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00322 583 PRINTS Heat shock factor (HSF) domain signature 166 178 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00322 583 Pfam HSF-type DNA-binding 115 220 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00322 583 SUPERFAMILY Winged helix DNA-binding domain 111 220 IPR036390 -
Cla05g00322 583 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 107 580 - -
Cla05g00322 583 SMART hsfneu3 111 220 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00322 583 MobiDBLite consensus disorder prediction 555 583 - -
Cla05g00322 583 Coils Coil 238 286 - -
Cla05g00322 583 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 107 580 IPR027725 -
Cla05g00322 583 MobiDBLite consensus disorder prediction 427 454 - -
Cla05g00322 583 Gene3D - 109 221 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00322 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101203054 839.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00322 Cla-Chr5:2931206 Cla10g00139 Cla-Chr10:1465094 1.06E-59 dispersed
Cla05g00322 Cla-Chr5:2931206 Cla03g00695 Cla-Chr3:8397293 1.09E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g916 . . . . . Bpe14g00850 . . . . Cma06g01196 Cma14g01914 . Car14g01712 Sed12g0352 Cpe08g00417 Cpe03g01613 Bhi01g00185 Tan10g0484 Cmetu06g1519 . . . Lcy11g1801 . . . . . . . . . . . Lsi05g01869 . . Cme06g00359 . . . Bda13g00480 . . Bma02g01198 . . Cmo06g01233 Cmo14g01968 . . . . . . . . . . . . . Cla05g00322 Cam05g0353 Cec05g0355 Cco05g0358 . Cmu05g0334 Cre05g0397 . Csa03g01069 Chy06g00340 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009917 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60999 PF00447 HSF_DNA-bind 7.20E-27 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00322 Cla_Chr05 FPKM 0.567657 0.0 0.467037 0.053567 1.751548 0.916025 0.79027 0.471342 0.167211 0.0