Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00328 ATGGACTTTCACTGCAGTAGCAACAGTGGCCGTGCTTCGACGAAGCTCCCCGACTGCTCCTCATCTTCTTCGTCGTGGTCGTTCTCCCTATCGGAGTTCGATCAGCCTTTTACAGAGCAACAACTCCAGGCGATCGAGGCCATTGAAGCTGCATATCAATCCACCAGCGCCAAAAAACGACGAGCAAATTCCACACCCGAAGAAAATGAGGTCTCGTGCGTTTCTCCCGACACCGGCCGGAGATTGCCTCCTTCCATTTCGTCTCACCAGTCTCCATATTCTTCTCCCCTATCGCCCTGTCGAGTAAACTCGAAGATGAGATTTCCTGCACTGAGTTTTGGTGGCCGAATTATTTACAGTAGAACTGTGAGTGAGGTCGATAGAGCGTCCAAGGAGCTCGCAAAGAAAATCAACTCCATGACGAAAGGAATGTATCGAATTACTATTGGGTTCGATATCGAGTGGAAACCCACATTTAGAAGAGGTGTTCCACCCGGAAAGGCTGCAGTTATGCAACTGTGCTTGGACAATTCTCAATGCCATGTGATGCATATCATTCATTCGGGAATACCTCAAAGTTTGCAGGCTCTTCTAGAGGATGACACACTCAGCAAGGCTGGAGTTGGCATTGTCAATGATGCTATAAAAGTTTTTAAAGATTATAACGTGTCTATCAAAGCAGTGGACGAGATCTCGGATCTAGCTAATCAAAAGCTTGCTGGAGTTCCCCGAAAATGGAGTCTTGGGTCTCTAACTGAGACGCTTATATCAAAAGAGGTGGTCTATACTATTTTTGTTTCTCTTCAAAAGCCCAACAAAATCAGACTTGGGAACTGGGAGGTGGCTGTGTTATCAAAGGAGCAGCTGCAGTATGCTGCCACAGACGCATTTGCTTCTTGGTATTTACATGAGATCTTAAAAGGATTTCCACATGCTCAAAAAGTAGCAGATTCAGAACCAATAGTGTGA 969 45.92 MDFHCSSNSGRASTKLPDCSSSSSSWSFSLSEFDQPFTEQQLQAIEAIEAAYQSTSAKKRRANSTPEENEVSCVSPDTGRRLPPSISSHQSPYSSPLSPCRVNSKMRFPALSFGGRIIYSRTVSEVDRASKELAKKINSMTKGMYRITIGFDIEWKPTFRRGVPPGKAAVMQLCLDNSQCHVMHIIHSGIPQSLQALLEDDTLSKAGVGIVNDAIKVFKDYNVSIKAVDEISDLANQKLAGVPRKWSLGSLTETLISKEVVYTIFVSLQKPNKIRLGNWEVAVLSKEQLQYAATDAFASWYLHEILKGFPHAQKVADSEPIV 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2979410 2982055 + ClCG05G003120.2 Cla05g00328 271818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00328 322 SMART 35exoneu6 117 311 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cla05g00328 322 MobiDBLite consensus disorder prediction 56 98 - -
Cla05g00328 322 PANTHER 3-5 EXONUCLEASE 43 314 - -
Cla05g00328 322 SUPERFAMILY Ribonuclease H-like 103 313 IPR012337 -
Cla05g00328 322 CDD WRN_exo 121 307 - -
Cla05g00328 322 Gene3D - 101 309 IPR036397 GO:0003676
Cla05g00328 322 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED 43 314 - -
Cla05g00328 322 MobiDBLite consensus disorder prediction 1 28 - -
Cla05g00328 322 Pfam 3'-5' exonuclease 130 307 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cla05g00328 322 MobiDBLite consensus disorder prediction 81 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00328 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-] - csv:101210151 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00328 Cla-Chr5:2979410 Cla10g01556 Cla-Chr10:30967127 9.57E-18 dispersed
Cla05g00328 Cla-Chr5:2979410 Cla10g01555 Cla-Chr10:30955961 8.56E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g922 . . . . . . . . . . . . Car06g01051 . Sed02g1532 Cpe08g00414 . Bhi01g00195 Tan10g0489 Cmetu04g0875 . Hepe05g1779 . Lcy11g1794 . . . . . . . . . Cone7ag0412 . Lsi05g01862 . . Cme06g00364 . . Bda11g00322 . . Bpe13g00871 . . . Cmo06g01236 . . . . . . . . . . . . . . Cla05g00328 Cam05g0358 Cec05g0361 Cco05g0364 Clacu05g0354 Cmu05g0339 Cre05g0402 . Csa03g01074 Chy06g00344 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010236 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00328 Cla_Chr05 FPKM 1.449377 2.022013 0.904626 0.935691 2.775765 2.64094 3.187434 5.652384 5.665848 5.346673