Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00335 ATGGAAGCCAAGATTGCTTTTATATCGATTGCCGCCCCTCTTTCTCTTCCCCTTTCTCCCTTTTTTTCCCCTCATCTCTTCTTCCTCCGCTTCCTCTCTGCAAATTTCTTGCGTTTCCTCTTTCGATCGCTCTGCTCAACCCGCAGTTCGCCGTTTCGTTTTCCATCAGAAAGGGCTGCCGGAATGAGCATCCAAAGTTCAAATGATCTACGTGATTGGAGTGAAAGAGTTGTTGAGAGAAGAACAGTATTGGACTTTGACTTAAATTGTCCACCCCCAGATGAGTGCATTGATCCAACTGGCCCTCGTGACGAAGCAGCACAGTACTATAATCATTACCAAGGACAGGCTATGGATGCTATCGATGAGGACATTGCTATAATCTCCCCTAGGAAGTTTGCTGAGGCCAGGAAGAATTTTCGAAGAAACCACTTTGACAGTAGCTGTGGTGTAGTCATCAGACGTAATGGCAACACAGAAGTTTATGGTGCTCTCTCAGATGTAACAAGTTGGCCCCCTTTTACAATTTGGTCACCTCGTACAATAAACAATAATGCATCCATACAGGAACAAACACTTCACAACTTGGACCTTCGCCTAAGCTGTGAAAGCAGTAGTAGGGCCACTAAGGCGACAATTGACACTGACATTCCTTCTGCACTTGCACTAAGTAGTAGCATCCAACCTACGGATCGGACTTTGCGGTGTGCGATCTGCATAGAACCACTGGTTGAAGAAACGACAACAAAATGTGGGCACGTTTTCTGCAGGAATTGCATCGAAACGGCCATAGCTACCCAGCATAGATGTCCCATATGTCGGCGTAAGCTTAGAAAACGAGATATTATCCGGATTTACCTTCCTTTTTCAAGTTAA 876 45.32 MEAKIAFISIAAPLSLPLSPFFSPHLFFLRFLSANFLRFLFRSLCSTRSSPFRFPSERAAGMSIQSSNDLRDWSERVVERRTVLDFDLNCPPPDECIDPTGPRDEAAQYYNHYQGQAMDAIDEDIAIISPRKFAEARKNFRRNHFDSSCGVVIRRNGNTEVYGALSDVTSWPPFTIWSPRTINNNASIQEQTLHNLDLRLSCESSSRATKATIDTDIPSALALSSSIQPTDRTLRCAICIEPLVEETTTKCGHVFCRNCIETAIATQHRCPICRRKLRKRDIIRIYLPFSS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3038165 3041993 - ClCG05G003190.1 Cla05g00335 271825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00335 291 ProSiteProfiles Zinc finger RING-type profile. 236 274 IPR001841 -
Cla05g00335 291 Pfam Zinc finger, C3HC4 type (RING finger) 235 273 - -
Cla05g00335 291 ProSitePatterns Zinc finger RING-type signature. 251 260 IPR017907 -
Cla05g00335 291 SMART ring_2 236 273 IPR001841 -
Cla05g00335 291 SUPERFAMILY RING/U-box 235 279 - -
Cla05g00335 291 PANTHER ELFLESS, ISOFORM B 62 288 - -
Cla05g00335 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 288 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00335 K22651 RNF4; E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27] - csv:101211386 424.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00335 Cla-Chr5:3038165 Cla06g01573 Cla-Chr6:29289936 1.05E-06 dispersed
Cla02g02313 Cla-Chr2:38240638 Cla05g00335 Cla-Chr5:3038165 9.72E-06 transposed
Cla05g00335 Cla-Chr5:3038165 Cla07g00194 Cla-Chr7:2142104 2.69E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g943 . . . . . . . . . . . Cma14g01904 Car06g01058 . Sed02g1522 Cpe08g00408 Cpe03g01604 Bhi01g00204 Tan10g0502 Cmetu06g0591 . Hepe05g1772 . Lcy11g1787 . . . . . . . . . . . . . . Cme06g00371 . . . . . . . . . Cmo06g01242 Cmo14g01958 . . . . . . . . . . . . . Cla05g00335 Cam05g0367 Cec05g0371 Cco05g0372 Clacu05g0362 Cmu05g0347 Cre05g0411 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013959 0 1 0 0 0 1 1 1 1 0 1 1 2 1 1 2 1 0 2 1 0 1 1 1 1 0 0 2 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00335 Cla_Chr05 FPKM 49.318283 56.307541 4.613146 6.910712 78.679771 70.316406 70.669144 16.075617 14.292908 14.039471