Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00337 ATGTTGTTTTCAAATCATTTTCTTCTCCACAAATCATTTCATTTCAATCTTCAAAATAGGAATGAATATTTGCAGATCTGTCTTGCAACTTCATCTGATTTCCACAAGGTTTTCACATTAAATTCGGATTATGCTTCTGGTCCTACTTCCAATTCTAGACTTGCGAGTCAAATAATGTCGCTTGAATGGAACTTGGAACAAGTTAAAATAGGTTGCTCGTCGTTTGAGAGTACGGTTTGGGGATTTAAACCTTGTCCAAAGGCTAATGGCTATTTGTATGCTTCAATGGAATCTGCGTTGATCAGATTGAAAATTCGGAGTTCACTAGTACCAAAATTTGGCAAGTGGGATGATGGGGAAGATGTCCCATATACAACCTATTTTGACAATGCAACAAAGGCTAGATCTGAGAGGATGAATCCGAACGATCCTTCTCTTCACCGAGAGGAGATTTCAGGCACAGTAAGGTCAAACTATGAGCGACACAAAATCAAAGAAGGTAGTGTTGTGAGGAGGCAAACTGAGTCTCCATTACACCATGATGCTCTGGAAATGCCTGGTCAGGATTATAATGGTATGAAGTCGGCGAAGAGTCAGGGGCAACAAGCATCAAGGCCAAAGCATGCACAAGAAGATTTGAGCTTGGAAGATGATAACATGAAGAAACATCTTGATTCCCCTTTGGACCATCAATCAAGGGGTCAGGTTAGCTTTAACTCGCCTCTTCATCAACGTCAAGGCAACAACACGACCAGTAATTCATCAAAAAGGACTATAAGAAATGGCGCAGGTTCTGACTGCAGCATAGAAAATTCGCCTCTCCATCCATGGCAGCATCCAAGGACCGAAGCAAAAACTGTTGTACCATCTTCGCCATTACGGGAAAGAAGGGGTTCAAGTTCGCCTAGAGGAGGTAGTGATGGTATAGCTCCCTTGACTCCTGGAAGATCACGTCAACGATCTGTTCCTCGGGGCAATGAAACCCCTGATCGCGGTGCCACTGTCCCAAAATTTGGTGACTGGGATGAGAGCGATCCATCATCATCTGAGAACTATACCAATATTTTCACCAGAGTGCGCGAGGAGAGACAAACTGAGGACGGAAGTTTGCCGACTGGGACCAATGTTTCTCGTAGTCGTAATAGTTCTGGTGCTGAAAATTCTAAGAGATGTTGCTGTTTTCCATGGGGGAAATGA 1197 43.36 MLFSNHFLLHKSFHFNLQNRNEYLQICLATSSDFHKVFTLNSDYASGPTSNSRLASQIMSLEWNLEQVKIGCSSFESTVWGFKPCPKANGYLYASMESALIRLKIRSSLVPKFGKWDDGEDVPYTTYFDNATKARSERMNPNDPSLHREEISGTVRSNYERHKIKEGSVVRRQTESPLHHDALEMPGQDYNGMKSAKSQGQQASRPKHAQEDLSLEDDNMKKHLDSPLDHQSRGQVSFNSPLHQRQGNNTTSNSSKRTIRNGAGSDCSIENSPLHPWQHPRTEAKTVVPSSPLRERRGSSSPRGGSDGIAPLTPGRSRQRSVPRGNETPDRGATVPKFGDWDESDPSSSENYTNIFTRVREERQTEDGSLPTGTNVSRSRNSSGAENSKRCCCFPWGK 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3057965 3062542 - ClCG05G003210.2 Cla05g00337 271827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00337 398 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 329 365 IPR008700 -
Cla05g00337 398 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 107 395 IPR040387 -
Cla05g00337 398 PANTHER RPM1-INTERACTING PROTEIN 4 107 395 - -
Cla05g00337 398 MobiDBLite consensus disorder prediction 230 272 - -
Cla05g00337 398 MobiDBLite consensus disorder prediction 192 208 - -
Cla05g00337 398 MobiDBLite consensus disorder prediction 133 388 - -
Cla05g00337 398 MobiDBLite consensus disorder prediction 209 229 - -
Cla05g00337 398 MobiDBLite consensus disorder prediction 140 179 - -
Cla05g00337 398 MobiDBLite consensus disorder prediction 368 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00337 K13456 RIN4; RPM1-interacting protein 4 - csv:101211635 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00337 Cla-Chr5:3057965 Cla09g00820 Cla-Chr9:8400406 1.02E-08 dispersed
Cla05g00337 Cla-Chr5:3057965 Cla07g00193 Cla-Chr7:2138922 6.12E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g946 . . . . . . . . . . . . . Car14g01704 Sed02g1520 . Cpe03g01603 Bhi01g00211 Tan10g0505 Cmetu06g1239 . . . . . . . . . . . . . Cone7ag0404 . Lsi05g01853 . . Cme06g00373 . . Bda11g00342 . . Bpe13g00864 . Bma06g01276 . . Cmo14g01956 . . . . . . . . . . . . . Cla05g00337 Cam05g0370 Cec05g0374 Cco05g0375 Clacu05g0364 Cmu05g0349 Cre05g0413 . Csa03g01084 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003340 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 9 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00337 Cla_Chr05 FPKM 7.093073 5.884714 9.938609 7.906777 2.859295 1.958906 3.384282 1.078348 0.65494 0.943578