Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00347 ATGGTTGAAGTCAAAAGAAATTTAGCTGGACATGACAATTTCAAGTCATTAAATGGCATAATTTTGAGATTTCCTCAATTCAAGGAGATATTACAAAACATCAGGGGTGTATTTGAACAGTATGGTGAGCTTTATTTCAGCTGTATCACTCTTTCTGAGATTCTCTTGCTCAAGATTTTCTCACATTCCCTCGCTATCTCTCTCGCAGATGAAGATTCAAATGGAAGCATCGATCGTGAAGAACTCAAGAAATGCTTACAACAGCTACAAATGCATATGACTGAGGACGAAGTTGAGGATCTTTTCCACTCTTGTGACATTGATGGAAGTGCCGGAATACAATTCAACGAGTTTATCGTTCTCCTATGTCTCATTTATCTTCTCAAAGATGAACATTCACCCACTAAATCAAAGCTGGGCTCACCTCAACTTGAAGCAACTTTTGACACAATCATCCAAGCTTTCATATTTCTAGATAAAAATGGCGACGGCAAGCTCAACCGGAAAGAAATGGTCAAGGCTTTGAATGAGGCTTCTCCATACGAGAGATCCCCTGCACGCATTACAAAAACTAGATTCAAAAGAAATCTCAGTGAGCTCATAAGCGTGTCACGCGCTCAGAGGGCGTGGACTGCACGTCAAGATCAGTCAAAATCTGAGGGCCACGTGGCAATCCCAACGGCGCCGCGTCTGGCGTGGAAATATCCTAACATGGAAATGGCTTGTGAAGCTATACAACTATGGACATTTAATGGATTAGTGGCTGCATTTCTTGATCTTGGTATAGCTTTTTTATTATTATGTGCATCGAGTCTTGTTTTCTTTACATCCAAATTTCTTGCACTGTTTGGATTATGTTTGCCTTGCCCTTGTGATGGGGTATTTGGGAACCTTAGTAGTGATCACTGCTTCCAAAAGTTACTTGTGGATCGTTCGTCCAGAAAAATATCTTCAGTCCTACATTCGACTAGAAAAAAGTTCCCATTAAATTCCGTGTGGGATGAGCCAAAATGTTGTTTTAAGTCAATGTTGGTGCACGAGAGGAATGTCAAGGAGGCACATGTTGAATTGGAAGGTGAAACATCAAGTAGTTCCTCTTTTAAAACCAGATCACAACAAGGTATGATTTATAGAGACTTTCCCAGTGTCAACGAATTGCATTGTGGAGGTGGTGTGGATCGCAGGAAGGTCATATCAGTGTCTCCGAACGACATTTCACAGTCAGATGTGGAACTGGAAGACCTTTCTCATTCTCCTTCAAGCTTCAGTGGATTTGGGGATCACAATACCGAGGATGGCTTCTTTTCTGTTGATTCTGGAGATGAAAGGGAGGCTTCATCAGACAACAGCGATCAATATAAAGTATTTCCCGATCTTGAACTAGATGATTCTTATGATGAGAAAATATGCGCAGAGATGTATGAAGCATCTGTTGGAGAGGCTGGGAACAGGTGCAGAGGGGAGTTATGTTTGGATGGTAATGAGAGTGATACAATCAAACTATTGGAGCAAGCACTTGAAGAAGAGCAGACAGCACGTGCTACCCTGTACCTGGAGCTTGAGAAAGAGAGAAGTGCTGCTGCCACCGCTGCCGATGAGGCCATGGCTATGATATTGCGTCTACAGGAAGAGAAGGCATCAATAGAAATGGATGCTAGGCAATACCAGAGGATGATAGAGGAGAAGACTGCTTATGATGCGGAAGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGAGAGCGGGAAATGCATTTCTTAGAGAAGGAAATTGAAGCTTTTCGGAAAAGTTTCTTTGACGATGATGGAGTGGATGTTGATATGCTTGACTCAGAATTTACACCTGCAAGGACCCCTTCTTTTCCTTATCCAACTGAAGATCCATCGCATATGCTTCAATGCATGAATAGATCCACTAGAGACGAGCAAGATTCCAATTACAAAATACATTCTTTGCAATATGAGATACCATCAGTGGAGTCACGAAACTTAACTTTCGAGTTTGGGGAAGAGTCACCATTTATTCAAGCGGATGAATTTGCTGATGCTGCAAAAGCTAGGGGAATGTTGTTGCACCAAGTTGCTGATAACTTCAAGGGCAGTGAAGAGATTGACTATGAGTTACAAGGAAAGGGCATGGTAGAGGATGAGAAGTTATACACTGTACCAGGAGAAGTAAATGAACTGGATCCATATCTGCAAAGCAATGAGTCAAATGGTTTAGGTAAGGTTGAGAAATGCACAGAATTAATTGCAGATGAACAAGAAAAAGTTGACGAAGTTTCATATGACGAATCAGCATTGGCTAAAACAATTCTTCCTTGTCTTGAGTACAATTTGGAAAAGATTGGTGACCATCAAAAGATGCGGACAAGAGATCTTGACTCTGTGAATGCTACAGATCCCCATCCTCATGATATTCATGTCATTGAAGATGAAGCTAGAATTTCAAATGAAGCAATTGCTAATGCAAGTGAAGAACCATTGGTTAACAGTACCTCGAGTATTCCAGTTAAATGTGACAGTCCATCCTTCAGCTTGTTGCAGAGTGAACTAGAAATCCCAAGAACCAGCTCAGATGCCTCTGGAAGATTTCCACCAATGGCTCGTTCTCGAAGCAATTCCGTGCGTTCTGAATTGCGTAGAAATTCGATGTCTGCTGTCGATTATGAAAGGTCAAAAATTGGCAATGAAGTTGAGTGGCTCAGAGGAAGGCTAAAGATTGTTCAAGAGGGAAGAGAAAAACTCAAGTTCTCTGTGGAGTACAAAGAGAATGAGAACAATCAGTTGCAACTTTTAGAGAACATAGCAAATCACCTTCGCGAAATCCGACAACTAACGGATCCTAGAAAGGCATCTTTGCAGGCTCCATTGCCTCCATCCTCTAAGGATGTGTCAAAGAAACGTTGCTGGCGAAGCTCATCCTTGAGCATTCATAGGAGCAGCTAG 2949 41.64 MVEVKRNLAGHDNFKSLNGIILRFPQFKEILQNIRGVFEQYGELYFSCITLSEILLLKIFSHSLAISLADEDSNGSIDREELKKCLQQLQMHMTEDEVEDLFHSCDIDGSAGIQFNEFIVLLCLIYLLKDEHSPTKSKLGSPQLEATFDTIIQAFIFLDKNGDGKLNRKEMVKALNEASPYERSPARITKTRFKRNLSELISVSRAQRAWTARQDQSKSEGHVAIPTAPRLAWKYPNMEMACEAIQLWTFNGLVAAFLDLGIAFLLLCASSLVFFTSKFLALFGLCLPCPCDGVFGNLSSDHCFQKLLVDRSSRKISSVLHSTRKKFPLNSVWDEPKCCFKSMLVHERNVKEAHVELEGETSSSSSFKTRSQQGMIYRDFPSVNELHCGGGVDRRKVISVSPNDISQSDVELEDLSHSPSSFSGFGDHNTEDGFFSVDSGDEREASSDNSDQYKVFPDLELDDSYDEKICAEMYEASVGEAGNRCRGELCLDGNESDTIKLLEQALEEEQTARATLYLELEKERSAAATAADEAMAMILRLQEEKASIEMDARQYQRMIEEKTAYDAEEMSILKEILVRREREMHFLEKEIEAFRKSFFDDDGVDVDMLDSEFTPARTPSFPYPTEDPSHMLQCMNRSTRDEQDSNYKIHSLQYEIPSVESRNLTFEFGEESPFIQADEFADAAKARGMLLHQVADNFKGSEEIDYELQGKGMVEDEKLYTVPGEVNELDPYLQSNESNGLGKVEKCTELIADEQEKVDEVSYDESALAKTILPCLEYNLEKIGDHQKMRTRDLDSVNATDPHPHDIHVIEDEARISNEAIANASEEPLVNSTSSIPVKCDSPSFSLLQSELEIPRTSSDASGRFPPMARSRSNSVRSELRRNSMSAVDYERSKIGNEVEWLRGRLKIVQEGREKLKFSVEYKENENNQLQLLENIANHLREIRQLTDPRKASLQAPLPPSSKDVSKKRCWRSSSLSIHRSS 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3129391 3135952 - ClCG05G003300.2 Cla05g00347 271837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00347 982 MobiDBLite consensus disorder prediction 409 427 - -
Cla05g00347 982 Coils Coil 531 558 - -
Cla05g00347 982 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Cla05g00347 982 SMART efh_1 61 89 IPR002048 GO:0005509
Cla05g00347 982 SMART efh_1 150 178 IPR002048 GO:0005509
Cla05g00347 982 SMART efh_1 97 125 IPR002048 GO:0005509
Cla05g00347 982 ProSiteProfiles EF-hand calcium-binding domain profile. 65 92 IPR002048 GO:0005509
Cla05g00347 982 CDD EFh 97 175 IPR002048 GO:0005509
Cla05g00347 982 Coils Coil 577 597 - -
Cla05g00347 982 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Cla05g00347 982 ProSiteProfiles GTD-binding domain profile. 497 595 IPR007656 -
Cla05g00347 982 Pfam EF-hand domain pair 74 122 IPR002048 GO:0005509
Cla05g00347 982 Coils Coil 923 943 - -
Cla05g00347 982 PANTHER BNAANNG28530D PROTEIN 242 968 - -
Cla05g00347 982 Gene3D - 52 200 - -
Cla05g00347 982 MobiDBLite consensus disorder prediction 951 982 - -
Cla05g00347 982 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Cla05g00347 982 MobiDBLite consensus disorder prediction 409 428 - -
Cla05g00347 982 MobiDBLite consensus disorder prediction 857 880 - -
Cla05g00347 982 Pfam EF hand 153 171 IPR002048 GO:0005509
Cla05g00347 982 PANTHER BNAANNG28530D PROTEIN 242 968 - -
Cla05g00347 982 SUPERFAMILY EF-hand 67 180 IPR011992 -
Cla05g00347 982 CDD EFh 65 122 IPR002048 GO:0005509
Cla05g00347 982 Pfam Zein-binding 502 591 IPR007656 -
Cla05g00347 982 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Cla05g00347 982 Coils Coil 499 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00347 - - - csv:101204513 1110.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01656 Cla-Chr2:31349600 Cla05g00347 Cla-Chr5:3129391 2.52E-11 dispersed
Cla05g00347 Cla-Chr5:3129391 Cla09g00836 Cla-Chr9:8583666 6.42E-52 dispersed
Cla05g00347 Cla-Chr5:3129391 Cla07g00065 Cla-Chr7:744473 1.39E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g895 . . . . . . . . . . . Cma14g01895 Car06g01066 Car14g01697 Sed12g0379 Cpe08g00398 Cpe03g01594 Bhi01g00233 Tan10g0519 Cmetu06g0638 . . . . . . . . . . . . . Cone7ag0391 . Lsi05g01843 . . Cme06g00380 . . . . . . . . . Cmo06g01252 Cmo14g01947 . . . . . . . . . . . . . Cla05g00347 Cam05g0377 Cec05g0382 Cco05g0382 Clacu05g0371 Cmu05g0356 Cre05g0420 . Csa03g01094 Chy06g00363 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00347 Cla_Chr05 FPKM 13.271281 11.481371 0.489899 0.525241 44.168926 38.168346 39.967613 0.297877 0.198137 0.259033