Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00348 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACAGCGGCGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACACGTGTTGGGATTTGTTTTTTCTTGCTATGTGTGATGATCAAGAAGTTGTGTTGTCGGTCTGTTTAAGACTCTGTTCTTGTTTCTCTGCTAATATGGCAGTATCTGTTGAGATTTTTATGTTGAGGAATATGGAAGAATTTCTCTTCGTTTTTCTTGGTTTATTGGAGTTTTGGAGATATTGTTTTTTGACTGTGATTGAAGAGGCAACGCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGGGAATTTTAGGCTGTGTTCTTAATCTCCAAAAATTTTCTCATCGAGAAAGTTCTTCCATTGTAGATATTTACACTATATGTTTTCTTGATGCCTTGTGCTGGCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCAAAGGATGAAAGTCAAGAAACAAGTTCCTCGTCGTCGCCATCGTCGAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTTAATCTCTCATTTGTTCTTCTCGAACAAACCCGAATCTGTTGCGATAAATCTGAGAAAACTCACTGTTTTCCATTTTCTACTCCCTGCTTTTACTGTAAGCAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCCGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACTGTTATGCCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGTAGCCCAGTTTCCCCAATCAGAGTAGGATCAACTGCCACTGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGACTCTCGAGGGCAATGCCCGACACGATGTTGAATGGATGATGAGTAATATTGGATGA 1344 46.06 MLSGFSQEPAGMYSAIPALPMDSGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDTCWDLFFLAMCDDQEVVLSVCLRLCSCFSANMAVSVEIFMLRNMEEFLFVFLGLLEFWRYCFLTVIEEATPKTIMRTMGVKGLTLYHLKSHLQGILGCVLNLQKFSHRESSSIVDIYTICFLDALCWQKYRLGKQSFKESTENSKDESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVNLSFVLLEQTRICCDKSEKTHCFPFSTPCFYCKQVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIRVGSTATAMKRPRPVFSHGDSMTLEGNARHDVEWMMSNIG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3139401 3143807 - ClCG05G003320.2 Cla05g00348 271838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00348 447 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 141 167 IPR044848 GO:0003700
Cla05g00348 447 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 75 IPR044848 GO:0003700
Cla05g00348 447 MobiDBLite consensus disorder prediction 221 236 - -
Cla05g00348 447 Gene3D - 49 170 - -
Cla05g00348 447 MobiDBLite consensus disorder prediction 215 236 - -
Cla05g00348 447 Coils Coil 337 357 - -
Cla05g00348 447 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 202 444 IPR044848 GO:0003700
Cla05g00348 447 PANTHER PROTEIN PHR1-LIKE 2 202 444 - -
Cla05g00348 447 PANTHER PROTEIN PHR1-LIKE 2 141 167 - -
Cla05g00348 447 PANTHER PROTEIN PHR1-LIKE 2 12 75 - -
Cla05g00348 447 Pfam MYB-CC type transfactor, LHEQLE motif 301 325 IPR025756 -
Cla05g00348 447 Pfam MYB-CC type transfactor, LHEQLE motif 245 266 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00348 - - - cmax:111473855 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00348 Cla-Chr5:3139401 Cla10g01268 Cla-Chr10:27482619 2.25E-12 dispersed
Cla05g00348 Cla-Chr5:3139401 Cla09g02227 Cla-Chr9:39854007 6.80E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00348 Cla_Chr05 FPKM 4.248571 3.32966 3.153391 3.832097 36.48888 36.726139 39.649635 0.068008 0.0 0.085436