Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00351 ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGATTCGACGAGGACGACGAACCTCCCGGTATCGACCCGGTCTATTTCCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGGGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAGGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACCCATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTAGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCTTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGCAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA 1134 47.53 MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKQIASESRFTAEDIASSVQQIFGFIHANTGM 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3180812 3186655 - ClCG05G003350.2 Cla05g00351 271841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00351 377 SMART finulus 184 235 IPR011598 GO:0046983
Cla05g00351 377 CDD bHLH_AtFAMA_like 181 249 - -
Cla05g00351 377 MobiDBLite consensus disorder prediction 11 27 - -
Cla05g00351 377 MobiDBLite consensus disorder prediction 141 163 - -
Cla05g00351 377 PANTHER TRANSCRIPTION FACTOR FAMA 44 376 IPR044283 GO:0003700|GO:0010052
Cla05g00351 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 229 IPR011598 GO:0046983
Cla05g00351 377 MobiDBLite consensus disorder prediction 167 181 - -
Cla05g00351 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 248 IPR036638 GO:0046983
Cla05g00351 377 Pfam Helix-loop-helix DNA-binding domain 179 230 IPR011598 GO:0046983
Cla05g00351 377 CDD ACT_UUR-ACR-like 302 346 - -
Cla05g00351 377 Gene3D - 176 245 IPR036638 GO:0046983
Cla05g00351 377 MobiDBLite consensus disorder prediction 1 27 - -
Cla05g00351 377 PANTHER TRANSCRIPTION FACTOR FAMA 44 376 - -
Cla05g00351 377 MobiDBLite consensus disorder prediction 139 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00002 Cla-Chr5:56108 Cla05g00351 Cla-Chr5:3180812 2.96E-55 dispersed
Cla05g00351 Cla-Chr5:3180812 Cla08g01134 Cla-Chr8:24069718 5.43E-49 dispersed
Cla05g00351 Cla-Chr5:3180812 Cla02g01570 Cla-Chr2:30378559 8.14E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61000 PF00010 HLH 7.70E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00351 - - cpep:111790068 602.053