Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00351 | ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGATTCGACGAGGACGACGAACCTCCCGGTATCGACCCGGTCTATTTCCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGGGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAGGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACCCATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTAGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCTTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGCAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA | 1134 | 47.53 | MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKQIASESRFTAEDIASSVQQIFGFIHANTGM | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3180812 | 3186655 | - | ClCG05G003350.2 | Cla05g00351 | 271841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00351 | 377 | SMART | finulus | 184 | 235 | IPR011598 | GO:0046983 | |
Cla05g00351 | 377 | CDD | bHLH_AtFAMA_like | 181 | 249 | - | - | |
Cla05g00351 | 377 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
Cla05g00351 | 377 | MobiDBLite | consensus disorder prediction | 141 | 163 | - | - | |
Cla05g00351 | 377 | PANTHER | TRANSCRIPTION FACTOR FAMA | 44 | 376 | IPR044283 | GO:0003700|GO:0010052 | |
Cla05g00351 | 377 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 178 | 229 | IPR011598 | GO:0046983 | |
Cla05g00351 | 377 | MobiDBLite | consensus disorder prediction | 167 | 181 | - | - | |
Cla05g00351 | 377 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 178 | 248 | IPR036638 | GO:0046983 | |
Cla05g00351 | 377 | Pfam | Helix-loop-helix DNA-binding domain | 179 | 230 | IPR011598 | GO:0046983 | |
Cla05g00351 | 377 | CDD | ACT_UUR-ACR-like | 302 | 346 | - | - | |
Cla05g00351 | 377 | Gene3D | - | 176 | 245 | IPR036638 | GO:0046983 | |
Cla05g00351 | 377 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cla05g00351 | 377 | PANTHER | TRANSCRIPTION FACTOR FAMA | 44 | 376 | - | - | |
Cla05g00351 | 377 | MobiDBLite | consensus disorder prediction | 139 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00002 | Cla-Chr5:56108 | Cla05g00351 | Cla-Chr5:3180812 | 2.96E-55 | dispersed | |
Cla05g00351 | Cla-Chr5:3180812 | Cla08g01134 | Cla-Chr8:24069718 | 5.43E-49 | dispersed | |
Cla05g00351 | Cla-Chr5:3180812 | Cla02g01570 | Cla-Chr2:30378559 | 8.14E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61000 | PF00010 | HLH | 7.70E-10 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00351 | - | - | cpep:111790068 | 602.053 |