Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00353 | ATGGTGGGGTGGAGTGGAGGGTTTGCACGTTTTTGCCAACCAATTCTGACCACATTTTTATTGGGCTTAGATGTTAGTTGGTTGGTTTTGAAGAGAAGGGCAGCCAATTCCTTCTACCTACTACCAAACCAAATCCCAATTTCAGTTGACAATCCAGAACTTTCCATCACCTTAATTACCCTTTCTTCTTTCTGTATATATTATTTTTCCTTTGCTTTCTCTTCCTCTTTCATCCTCGTTTTCGTCACCCACTTTCCCCTTTTCCTCTGCTTCTCAATCGGATCTAATCCGACCCACGAATCCAATTCCACCAAAATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTTGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTTGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA | 720 | 44.17 | MVGWSGGFARFCQPILTTFLLGLDVSWLVLKRRAANSFYLLPNQIPISVDNPELSITLITLSSFCIYYFSFAFSSSFILVFVTHFPLFLCFSIGSNPTHESNSTKMGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3195017 | 3197697 | + | ClCG05G003370.2 | Cla05g00353 | 271843 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00353 | 239 | PRINTS | Cytochrome B5 signature | 135 | 145 | IPR001199 | - | |
| Cla05g00353 | 239 | PRINTS | Cytochrome B5 signature | 145 | 159 | IPR001199 | - | |
| Cla05g00353 | 239 | PRINTS | Cytochrome B5 signature | 160 | 167 | IPR001199 | - | |
| Cla05g00353 | 239 | PRINTS | Cytochrome B5 signature | 173 | 185 | IPR001199 | - | |
| Cla05g00353 | 239 | PANTHER | CYTOCHROME B5 | 106 | 237 | - | - | |
| Cla05g00353 | 239 | PANTHER | CYTOCHROME B5-LIKE | 106 | 237 | - | - | |
| Cla05g00353 | 239 | Pfam | Cytochrome b5-like Heme/Steroid binding domain | 114 | 185 | IPR001199 | - | |
| Cla05g00353 | 239 | Gene3D | - | 103 | 191 | IPR036400 | - | |
| Cla05g00353 | 239 | ProSiteProfiles | Cytochrome b5 family, heme-binding domain profile. | 110 | 186 | IPR001199 | - | |
| Cla05g00353 | 239 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 141 | 148 | IPR018506 | GO:0020037 | |
| Cla05g00353 | 239 | SUPERFAMILY | Cytochrome b5-like heme/steroid binding domain | 111 | 195 | IPR036400 | - | |
| Cla05g00353 | 239 | SMART | Cyt_b5_2 | 113 | 186 | IPR001199 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00023 | Cla-Chr1:156146 | Cla05g00353 | Cla-Chr5:3195017 | 1.78E-67 | dispersed | |
| Cla05g00061 | Cla-Chr5:677537 | Cla05g00353 | Cla-Chr5:3195017 | 5.51E-45 | dispersed | |
| Cla05g00353 | Cla-Chr5:3195017 | Cla06g00260 | Cla-Chr6:3283674 | 8.87E-31 | dispersed | |
| Cla06g00312 | Cla-Chr6:4015887 | Cla05g00353 | Cla-Chr5:3195017 | 7.88E-10 | dispersed | |
| Cla08g01049 | Cla-Chr8:23164007 | Cla05g00353 | Cla-Chr5:3195017 | 2.93E-30 | transposed | |
| Cla11g00193 | Cla-Chr11:2243127 | Cla05g00353 | Cla-Chr5:3195017 | 7.00E-18 | transposed | |
| Cla05g00353 | Cla-Chr5:3195017 | Cla06g00745 | Cla-Chr6:9907715 | 5.03E-60 | wgd | |
| Cla05g00353 | Cla-Chr5:3195017 | Cla07g00186 | Cla-Chr7:2078753 | 3.28E-44 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00353 | K23490 | - | csv:101214209 | 286.189 |