Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00353 ATGGTGGGGTGGAGTGGAGGGTTTGCACGTTTTTGCCAACCAATTCTGACCACATTTTTATTGGGCTTAGATGTTAGTTGGTTGGTTTTGAAGAGAAGGGCAGCCAATTCCTTCTACCTACTACCAAACCAAATCCCAATTTCAGTTGACAATCCAGAACTTTCCATCACCTTAATTACCCTTTCTTCTTTCTGTATATATTATTTTTCCTTTGCTTTCTCTTCCTCTTTCATCCTCGTTTTCGTCACCCACTTTCCCCTTTTCCTCTGCTTCTCAATCGGATCTAATCCGACCCACGAATCCAATTCCACCAAAATGGGTAGCGGAGAAAAGGTTTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAGGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGACTTTGAAGACGTGGGCCACAGTGACAATGCAAGAGAGATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTTGCCTACACACCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCATACGCTTCTACACCAAACAAGCTTGA 720 44.17 MVGWSGGFARFCQPILTTFLLGLDVSWLVLKRRAANSFYLLPNQIPISVDNPELSITLITLSSFCIYYFSFAFSSSFILVFVTHFPLFLCFSIGSNPTHESNSTKMGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3195017 3197697 + ClCG05G003370.2 Cla05g00353 271843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00353 239 PRINTS Cytochrome B5 signature 135 145 IPR001199 -
Cla05g00353 239 PRINTS Cytochrome B5 signature 145 159 IPR001199 -
Cla05g00353 239 PRINTS Cytochrome B5 signature 160 167 IPR001199 -
Cla05g00353 239 PRINTS Cytochrome B5 signature 173 185 IPR001199 -
Cla05g00353 239 PANTHER CYTOCHROME B5 106 237 - -
Cla05g00353 239 PANTHER CYTOCHROME B5-LIKE 106 237 - -
Cla05g00353 239 Pfam Cytochrome b5-like Heme/Steroid binding domain 114 185 IPR001199 -
Cla05g00353 239 Gene3D - 103 191 IPR036400 -
Cla05g00353 239 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 110 186 IPR001199 -
Cla05g00353 239 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 141 148 IPR018506 GO:0020037
Cla05g00353 239 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 111 195 IPR036400 -
Cla05g00353 239 SMART Cyt_b5_2 113 186 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00353 K23490 CYB5; cytochrome b5 - csv:101214209 286.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00023 Cla-Chr1:156146 Cla05g00353 Cla-Chr5:3195017 1.78E-67 dispersed
Cla05g00061 Cla-Chr5:677537 Cla05g00353 Cla-Chr5:3195017 5.51E-45 dispersed
Cla05g00353 Cla-Chr5:3195017 Cla06g00260 Cla-Chr6:3283674 8.87E-31 dispersed
Cla06g00312 Cla-Chr6:4015887 Cla05g00353 Cla-Chr5:3195017 7.88E-10 dispersed
Cla08g01049 Cla-Chr8:23164007 Cla05g00353 Cla-Chr5:3195017 2.93E-30 transposed
Cla11g00193 Cla-Chr11:2243127 Cla05g00353 Cla-Chr5:3195017 7.00E-18 transposed
Cla05g00353 Cla-Chr5:3195017 Cla06g00745 Cla-Chr6:9907715 5.03E-60 wgd
Cla05g00353 Cla-Chr5:3195017 Cla07g00186 Cla-Chr7:2078753 3.28E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00353 Cla_Chr05 FPKM 22.306383 23.855656 21.49016 23.805513 42.30727 42.713402 42.221523 23.852922 22.445255 20.417213