Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00369 ATGGCTAGGGAAGTACAGGGCATTTTAAGCCAACAATTATACATGGAAAGACCAAGGGTTGTTTCGGATGTACGAATTACTGCCGATCATAGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCCCAGTTTATGCGGGATCGAGTTGCTTTAAGAAGATTGTCTGACATGAGTGATGAAGATCAACAACAACAACAGCAAAAGAGAATAGGTCTTGGGTTCAATCCGAGCAACCAATTGGTGTATGAGGATCTCAGTGGCATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAACTGTCATCAACGCCAATTACTGTTTATGCAGCTGAAAGGGACAACACGGTTTATCCTAACAATGCAAGCAAATGTCAGTGGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGGAGTTCAATTTGGCCCCATGACATCGACCTTGTATGCATTGGATTCACCTCGTTCATGTTATCCTTGCGGGGCTGTATTTGGAGATTTCTCTGCCAATGACAAGATGAAATTTCTCTGTAGTTTTGGAGGCAGAATACTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGGTGGAGAAACACGCATCGTATCCATTAGAAAAAACATCTCATGTGAAGAACTTACCAAAAAGACTTACGCTGTCTGTAAATATGCTCACACGATAAAGTACCAGCTTCCTGGTGAAGATCTTGATTCACTTATCTCTGTCTGTTCTGATGAGGATCTTCATCATATGATAGAGGAATATCATGAGCTAGAAAATGCAGAGGGTTCTCAAAGACTTAGAATTTTTCTTATTTCTTCAAATGATTGTGGTGAGAGCCCTCCTTCTATTGAAGGAAGGGTAGTTCAACCAATTGATGTTGATTATCAATATGTTGCGGCTGTGAACGGTATGCTAGACGCAAGTCTTCAAAGGAGCTCTAGTGGGCAGAGTTTCACAAGCCAGACAAGCCAGGTGGGAGCCATCTCAGATCATAGTACCAATTTTCATACTGATTCGTCACATGCTACAGACTCAAAAGAGGCCAATTCACCAATGCCAAATTTGGCGGGAATGTTTCCTAGACCTGGCGGTCAATTGTTAAATCACATTCAAGTCCCACTCAAGTCATTTAATCAATCACCTTTAATTTCTCCGGTTACAGTAATGCAAAAAGATTTCAAGAATGTGGATGCAACATATATAGAAGATGCTAGAAACTTCACTCCATTTGTTTCAGGAAAACATCCATGTGATATGGTTTATTATGTTGATGCAGCGGGCTGTCACAATCATCTTTACCATGGTTCTCCATTGATGAATTATCATCATGAAAAATCTACAGCGGAAACTGATGAGACATACAAAGTTCTTAATGTTCATTTCCCACGAAGCTCCAGTGAAAATTTTGTGCCTGCACCCAATTGGGGTCTAAGCGATACACATTCAATGAAAACTATGCTCAAGGAACGGGCAGTAAATTATGAACAGTTATGCTCTGATGCGGAGTATTTGATTCAGCTAAGATCTGGAACCACCCATATGGGACAAAGAATTATGCATTCACATTCTGAGCCCCTACTGCTGGAACAGGATCAAAAATCGAATCATGGAGGACTCTATCCACTGAACTCATTCAACGATAGTGATCAGTTACCTTCGTTGGCAATGTCAAGTTCCTTGCAGGATTTGCCAACAATGTGGAAACAGAGAGTTGACACGGAATTTCAAGATGCTAAATATGAGAATCATCGAGTGTTAGCATCTGGTAGTGATAATGAAACATATGTGGAATGCAATTTTGATGAAAAGAACGCTAATTTCAATGGAAGTATTTATGTTCCATCACTTAATGATGAAGAAAAATACAGATATTTGCAGCATGTTGACTACAAACAAAATGGTTGTCTCCCCAAAGAGGTTCAAAGCCTTGCAGGCAGATCTTCTTCTGAACGACGTCTTGAATTAGAAAATTCTGCAGATACCACGGGTGGCCCCTCCATCATTTCCCATTTAGAAAGAACTGCTCCAAAAATTTTCGAGGAGAGCCAATATTCTACCAAGGATCGACAAGCAACTTCTGATATAGTAAGGAGCCAACCGTTCTCTTGCACATCTTCTGATCTCCTACCTCATACAACTCTAGCTTTGAGCGATAAAAGGATCATAAATCAGGAACCAACATGGAATAGCTCTGCTTCAGGTAGAGAGGTTTCTCTAGGCGACGAGAACTTTGTAACCTGTCATTACCGCAAGGTTGCAGCCCATAGCAGAAAAAAGAGCAACTGTGATGATGCTATCTTTATCAAATCATCACACTCAGATGATTCTCGTGGCAATGAGGATGGAGAGTTAGCTGTAATAGTTGAAGATGTAACTCATAGTATGCCTCCTGACATACCCTTAGCTTCAGGAGTTGTCCCAAGGGTTGAAAACGAGGCCAGCGATGAATGTCCATCTTCAAGAGGAAATGATGCTCTGAGTTCTAGTTCAGAAACTGACAATGAGGATGCCGACAGTATCCTTAGTTCAAGGGATGAGTCTATGAGCGAGGCAACAATAGCTGAAATCGAAGCTGGCATCTATGGCCTGCAGATCATAAAGGATGCAGATCTTGAAGAACTGCAAGAGTTGGGATCTGGGACATTTGGCACAGTTTTTCATGGAAAATGGAGGGGAACAGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGCAGTTTCTCAGAGCAAGAACGACTGACTAGAGATTTCTGGAGAGAAGCAAGGATTCTATCGACTCTTCACCATCCAAACGTTTTGGCCTTTTATGGGGTGGTTCCTGATGGACCTGATGGAACATTGGCAACTGTAACCGAGTATATGGTAAACGGTTCGTTAAGGCATGTCCTTTTAAGGAAGGATAGATTGCTTGATCGTCGGAAAAGGCTTATAATTGCAATGGATGCGGCTTTTGGCATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATCTGAAATGTGATAATTTGTTAGTCAACTTGAGGGATCCTGAACGACCTATATGCAAGGTTGGAGATTTTGGGTTGTCGAGAATTAAGCGCAACACACTTGTTTCTGGAGGCGTACGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGCAGCAGTTCTAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACAGGCGAGGAGCCATATGCTAATATGCATTGCGGTGCCATCATCGGTGGAATTGTAAGTAATACTCTTAGACCGCCGATCCCGAAACGATGCGATCCTGAATGGAAAAAGCTAATGGAAGAGTGTTGGTCTCCTGAACCTGCAGCAAGGCCATCATTCACAGAGATAACAAATAGACTTCGCAGCATGTCGGTAGCGCTTCAAATCAAAAAGAGGCCAAATGTAGTAAGTAGATGA 3498 41.62 MAREVQGILSQQLYMERPRVVSDVRITADHSVSDVCVQTGEVFSPQFMRDRVALRRLSDMSDEDQQQQQQKRIGLGFNPSNQLVYEDLSGILGLKRMNSESSSELSSTPITVYAAERDNTVYPNNASKCQWEYSATGQASGAYADEINRGVQFGPMTSTLYALDSPRSCYPCGAVFGDFSANDKMKFLCSFGGRILPRPNDGKLRYVGGETRIVSIRKNISCEELTKKTYAVCKYAHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELENAEGSQRLRIFLISSNDCGESPPSIEGRVVQPIDVDYQYVAAVNGMLDASLQRSSSGQSFTSQTSQVGAISDHSTNFHTDSSHATDSKEANSPMPNLAGMFPRPGGQLLNHIQVPLKSFNQSPLISPVTVMQKDFKNVDATYIEDARNFTPFVSGKHPCDMVYYVDAAGCHNHLYHGSPLMNYHHEKSTAETDETYKVLNVHFPRSSSENFVPAPNWGLSDTHSMKTMLKERAVNYEQLCSDAEYLIQLRSGTTHMGQRIMHSHSEPLLLEQDQKSNHGGLYPLNSFNDSDQLPSLAMSSSLQDLPTMWKQRVDTEFQDAKYENHRVLASGSDNETYVECNFDEKNANFNGSIYVPSLNDEEKYRYLQHVDYKQNGCLPKEVQSLAGRSSSERRLELENSADTTGGPSIISHLERTAPKIFEESQYSTKDRQATSDIVRSQPFSCTSSDLLPHTTLALSDKRIINQEPTWNSSASGREVSLGDENFVTCHYRKVAAHSRKKSNCDDAIFIKSSHSDDSRGNEDGELAVIVEDVTHSMPPDIPLASGVVPRVENEASDECPSSRGNDALSSSSETDNEDADSILSSRDESMSEATIAEIEAGIYGLQIIKDADLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRLLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSSSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDPEWKKLMEECWSPEPAARPSFTEITNRLRSMSVALQIKKRPNVVSR 1165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3357633 3363201 - ClCG05G003560.1 Cla05g00369 271859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00369 1165 MobiDBLite consensus disorder prediction 829 849 - -
Cla05g00369 1165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1009 1021 IPR008271 GO:0004672|GO:0006468
Cla05g00369 1165 ProSiteProfiles Protein kinase domain profile. 884 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00369 1165 PRINTS Tyrosine kinase catalytic domain signature 966 979 IPR001245 GO:0004672|GO:0006468
Cla05g00369 1165 PRINTS Tyrosine kinase catalytic domain signature 1003 1021 IPR001245 GO:0004672|GO:0006468
Cla05g00369 1165 PRINTS Tyrosine kinase catalytic domain signature 1074 1096 IPR001245 GO:0004672|GO:0006468
Cla05g00369 1165 PRINTS Tyrosine kinase catalytic domain signature 1118 1140 IPR001245 GO:0004672|GO:0006468
Cla05g00369 1165 MobiDBLite consensus disorder prediction 655 685 - -
Cla05g00369 1165 PANTHER SERINE-THREONINE PROTEIN KINASE 102 1160 - -
Cla05g00369 1165 SUPERFAMILY CAD & PB1 domains 200 288 - -
Cla05g00369 1165 SMART PB1_new 199 286 IPR000270 GO:0005515
Cla05g00369 1165 Pfam PB1 domain 200 283 IPR000270 GO:0005515
Cla05g00369 1165 MobiDBLite consensus disorder prediction 809 861 - -
Cla05g00369 1165 ProSitePatterns Protein kinases ATP-binding region signature. 890 915 IPR017441 GO:0005524
Cla05g00369 1165 MobiDBLite consensus disorder prediction 327 362 - -
Cla05g00369 1165 Pfam Protein tyrosine and serine/threonine kinase 886 1147 IPR001245 GO:0004672|GO:0006468
Cla05g00369 1165 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 102 1160 - -
Cla05g00369 1165 CDD PB1_UP2 188 284 - -
Cla05g00369 1165 Gene3D Phosphorylase Kinase; domain 1 877 971 - -
Cla05g00369 1165 SMART serkin_6 884 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00369 1165 Gene3D - 203 287 - -
Cla05g00369 1165 CDD STKc_MAP3K-like 890 1147 - -
Cla05g00369 1165 Gene3D Transferase(Phosphotransferase) domain 1 972 1163 - -
Cla05g00369 1165 SUPERFAMILY Protein kinase-like (PK-like) 875 1146 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00369 - - - csv:101205945 2038.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00400 Cla-Chr3:4584991 Cla05g00369 Cla-Chr5:3357633 3.49E-36 dispersed
Cla05g00369 Cla-Chr5:3357633 Cla06g01196 Cla-Chr6:25170058 5.50E-33 dispersed
Cla05g00369 Cla-Chr5:3357633 Cla04g00964 Cla-Chr4:24754951 2.92E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80532 PF07714 PK_Tyr_Ser-Thr 1.40E-61 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00369 Cla_Chr05 FPKM 78.232437 75.954269 0.149219 0.0 0.353603 0.598165 0.782222 0.0 0.0 0.0