Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00371 ATGAAATGGATATGTATGGCCCCTTTTTTGCTCTTAACTGGGTTGATTGTGGCCGATAATCGACGAATTCCCACCACCCTCGATGGCCCATTTGTGCCCGTTACTCGTCGATTTGATCCGTCTTTGAGGCGTGGAAGCGATGATTTGCCAATGGATCATCCAAGGCTTCGGAAGAATGTTTCATCCAACTTCCCTGAACAGATATCGCTTGCGATTTCCACTCCAAGCTCCATGTGGGTATCTTGGGTTACGGGGGATGCTCAGATTGGGAAAAATGTGACTGCGCTGGATCCATCGTCTATTGCTAGTGAGGTTTGGTATGGAAAAGAAAGTGGAAAGTACACTAGTGTGAGAAGAGGGTTTTCGACTGTTTACAGTCAGCTATATCCATTTGAAGGGCTGCTTAATTACACCTCTGGCATCGTTCACCACGTTAGAATCGACGGTATAAAAGCTCTTCTTCACAGTTTTCTTATGATATTTGGAATTTATGTTGTTAAGTCTCTTGCAGGTCTCGAACCTGAAACCAAGTATTATTACCAGTGCGGAGATAGCTCTATTTCAGCTTTGAGTAAAGAGCACGTCTTTGAGACTTTACCATTGCCGAGCAAAAGTTCATATCCTCGTAGAATAGCCATTGTTGGAGACTTGGGACTTACAAGCAATTCAACAACAACCATTAATCATCTGGTTGAGAATGATCCTTCTCTGATCTTGATGATAGGAGATTTAACTTATGCGAACCAATACCTCACAACTGGTGGCAAAGGAGCTTCATGTTTTTCATGTGCATTTCCAGATGCTCCTATCAGAGAGACATATCAACCTCGTTGGGATGGGTGGGGCAGAGAAATGGAGAACACAATAATGAACAGGAGAGGAAGAATGGTCTGTTTTTTTAAAATTCTTACATCACAATATACTCTGATTTTTACATGGGACATTCTGGGTATCAGGTTTATGGAGCCAGTAACCTCACGAGTACCAATGATGGTTATTGAGGGTAACCATGAGATTGAGCCCCAAATTTCTGGGATCACTTTCAAATCATATTTGACAAGATTTGCAGTGCCCTCTGCTGAGAGTGGCTCGAATAGTAGCTTCTACTACTCATTCAATGCTGGAGGAATTCATTTTCTTATGTTGGGAGCATATGTCGATTACAACGCTACTGGTGCTCAGTATGCTTGGCTGAAAGAAGATCTGGAAAGAGTGGACCGTACGGTGACACCCTGGTTAGTAGCTGCCTGGCATCCTCCATGGTACAATAGCTATTCTTCTCATTACCAGGAATTTGAATGCATGCGCCAAGAGATGGAACACCTTCTTTATGAGCAGGGTGTCGATATTGTTTTTTCTGGTCATGTACATGCCTACGAACGCATGAACAGAGTGTACAACTATACACTGGATCCTTGTGGCCCAGTTTACATAACAGTTGGAGATGGTGGAAACATCGAAAAGGTTGATGTGGACCACGCTGATGACCCTGGAAAATGTCCTTCAGCTGGTGATAACATTCCAGAATTTGGAGGAGTGTGTCGTTTGAACTATTCTTCAGGTCCAGCAGAAGGAAAGTTTTGTTGGAACACCCAGCCTGAATGGAGTGCATTTAGAGAAAGCAGCTTTGGTCATGGAACGCTTGAGGTAACAAATTCAACGCACGCTTTGTGGACTTGGCACCGGAATCAAGATGTGTACAAGGAAGATAGCCATGGAGATCAAATATACATTGTTCGACAACCTGAGTTGTGCTTTCCAACTACCAAGCCGAATCCTTCATTACTCCCTCGCTCGACACTTCCGCGTTCTACGTCACATAGGCACCTCTCTAAGGTACTCTTAGTTGTCTCTTCACTTTCAATGGCTCTCATCTTATCACCAGTCCCCAGCCTGCTGCTACCAGAAGTTAGTTGGCATGTTATGATGTCGATCGTCGAGCGACCGACACTGGCTTCAAGAAGTTTCAGACCTCAACCTGCTTATGCACTCTTTTTGCCCCCTTCAAGTGTCCATGGAAGGAGTATGCTGAGTATTCCTCTAAAAATAGTATCCTTAAAGGAAGGTACTATTGAACCAACCCTTTTTCTTAGTTCAAGATTAGAGACGAGGGTTCGGACTCCTGACTTTTTGGTCGAGGGTGTATGTCTAAGCCAATTGAGCTATATTCATATGAGCATAATGAATTCAGTACAAAACCTTAATAGTCCACATTACATTAGCAAATAA 2229 43.43 MKWICMAPFLLLTGLIVADNRRIPTTLDGPFVPVTRRFDPSLRRGSDDLPMDHPRLRKNVSSNFPEQISLAISTPSSMWVSWVTGDAQIGKNVTALDPSSIASEVWYGKESGKYTSVRRGFSTVYSQLYPFEGLLNYTSGIVHHVRIDGIKALLHSFLMIFGIYVVKSLAGLEPETKYYYQCGDSSISALSKEHVFETLPLPSKSSYPRRIAIVGDLGLTSNSTTTINHLVENDPSLILMIGDLTYANQYLTTGGKGASCFSCAFPDAPIRETYQPRWDGWGREMENTIMNRRGRMVCFFKILTSQYTLIFTWDILGIRFMEPVTSRVPMMVIEGNHEIEPQISGITFKSYLTRFAVPSAESGSNSSFYYSFNAGGIHFLMLGAYVDYNATGAQYAWLKEDLERVDRTVTPWLVAAWHPPWYNSYSSHYQEFECMRQEMEHLLYEQGVDIVFSGHVHAYERMNRVYNYTLDPCGPVYITVGDGGNIEKVDVDHADDPGKCPSAGDNIPEFGGVCRLNYSSGPAEGKFCWNTQPEWSAFRESSFGHGTLEVTNSTHALWTWHRNQDVYKEDSHGDQIYIVRQPELCFPTTKPNPSLLPRSTLPRSTSHRHLSKVLLVVSSLSMALILSPVPSLLLPEVSWHVMMSIVERPTLASRSFRPQPAYALFLPPSSVHGRSMLSIPLKIVSLKEGTIEPTLFLSSRLETRVRTPDFLVEGVCLSQLSYIHMSIMNSVQNLNSPHYISK 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3373741 3379041 - ClCG05G003580.2 Cla05g00371 271861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00371 742 PANTHER PURPLE ACID PHOSPHATASE 23 15 152 - -
Cla05g00371 742 SUPERFAMILY Purple acid phosphatase, N-terminal domain 47 151 IPR008963 GO:0003993|GO:0046872
Cla05g00371 742 Pfam Calcineurin-like phosphoesterase 210 459 IPR004843 GO:0016787
Cla05g00371 742 Gene3D - 306 511 IPR029052 -
Cla05g00371 742 Gene3D - 513 582 IPR029052 -
Cla05g00371 742 PANTHER ACID PHOSPHATASE RELATED 302 587 IPR039331 GO:0003993
Cla05g00371 742 SUPERFAMILY Purple acid phosphatase, N-terminal domain 169 200 IPR008963 GO:0003993|GO:0046872
Cla05g00371 742 SUPERFAMILY Metallo-dependent phosphatases 210 567 IPR029052 -
Cla05g00371 742 Gene3D - 161 201 - -
Cla05g00371 742 Gene3D - 64 155 - -
Cla05g00371 742 PANTHER ACID PHOSPHATASE RELATED 167 289 IPR039331 GO:0003993
Cla05g00371 742 Gene3D - 205 299 IPR029052 -
Cla05g00371 742 PANTHER ACID PHOSPHATASE RELATED 15 152 IPR039331 GO:0003993
Cla05g00371 742 CDD MPP_PAPs 205 580 IPR041792 -
Cla05g00371 742 Pfam Iron/zinc purple acid phosphatase-like protein C 524 565 IPR025733 -
Cla05g00371 742 PANTHER PURPLE ACID PHOSPHATASE 23 167 289 - -
Cla05g00371 742 PANTHER PURPLE ACID PHOSPHATASE 23 302 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00371 K22390 ACP7; acid phosphatase type 7 - csv:101206188 1031.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00371 Cla-Chr5:3373741 Cla06g00762 Cla-Chr6:10143849 0 dispersed
Cla05g00371 Cla-Chr5:3373741 Cla02g00499 Cla-Chr2:4932405 1.33E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g848 . . . . . . . . . . . Cma14g01873 . Car14g01675 Sed12g0408 . Cpe03g01571 Bhi01g00061 Tan10g0557 Cmetu06g2760 . . . Lcy11g1746 . . . . . . . . . . Cone4ag0384 Lsi05g01814 Csa02g00942 . Cme06g00409 . Blo07g00296 Bda11g00659 . . . . Bma06g01625 . . Cmo14g01919 . . . . . . . . . . . . . Cla05g00371 Cam05g0404 Cec05g0409 Cco05g0409 Clacu05g0399 Cmu05g0384 Cre05g0446 . Csa03g01127 Chy06g00394 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009299 0 5 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00371 Cla_Chr05 FPKM 5.172161 5.778375 2.203026 1.79103 0.800027 0.224057 0.319625 12.289161 13.79393 10.331841