Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00372 | ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAGCTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTCCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCTATTTCCATTTTCGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG | 1350 | 47.56 | MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGAAEKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3399550 | 3404164 | + | ClCG05G003590.2 | Cla05g00372 | 271862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00372 | 449 | PANTHER | PECTATE LYASE | 14 | 446 | - | - | |
Cla05g00372 | 449 | PANTHER | PECTATE LYASE 18-RELATED | 14 | 446 | IPR045032 | GO:0030570 | |
Cla05g00372 | 449 | Pfam | Pectate lyase | 186 | 364 | IPR002022 | - | |
Cla05g00372 | 449 | SMART | amb_all | 175 | 372 | IPR002022 | - | |
Cla05g00372 | 449 | Gene3D | - | 100 | 442 | IPR012334 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 123 | 140 | IPR018082 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 147 | 172 | IPR018082 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 183 | 199 | IPR018082 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 247 | 268 | IPR018082 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 349 | 368 | IPR018082 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 391 | 415 | IPR018082 | - | |
Cla05g00372 | 449 | PRINTS | Pollen allergen Amb family signature | 420 | 443 | IPR018082 | - | |
Cla05g00372 | 449 | SUPERFAMILY | Pectin lyase-like | 77 | 444 | IPR011050 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g00372 | Cla06g00739 | CCT | |
Cla05g00372 | Cla06g00739 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00372 | Cla-Chr5:3399550 | Cla05g02174 | Cla-Chr5:33325321 | 0 | dispersed | |
Cla05g02468 | Cla-Chr5:36113391 | Cla05g00372 | Cla-Chr5:3399550 | 1.06E-167 | dispersed | |
Cla03g00314 | Cla-Chr3:3763924 | Cla05g00372 | Cla-Chr5:3399550 | 0 | transposed | |
Cla08g01714 | Cla-Chr8:29708349 | Cla05g00372 | Cla-Chr5:3399550 | 0 | transposed | |
Cla09g01903 | Cla-Chr9:36705078 | Cla05g00372 | Cla-Chr5:3399550 | 0 | transposed | |
Cla05g00372 | Cla-Chr5:3399550 | Cla06g00739 | Cla-Chr6:9598542 | 0 | wgd | |
Cla05g00372 | Cla-Chr5:3399550 | Cla07g00163 | Cla-Chr7:1854874 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00372 | K01728 | - | csv:101218188 | 850.121 |