Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00372 ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAGCTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTCCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCTATTTCCATTTTCGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG 1350 47.56 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGAAEKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3399550 3404164 + ClCG05G003590.2 Cla05g00372 271862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00372 449 PANTHER PECTATE LYASE 14 446 - -
Cla05g00372 449 PANTHER PECTATE LYASE 18-RELATED 14 446 IPR045032 GO:0030570
Cla05g00372 449 Pfam Pectate lyase 186 364 IPR002022 -
Cla05g00372 449 SMART amb_all 175 372 IPR002022 -
Cla05g00372 449 Gene3D - 100 442 IPR012334 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cla05g00372 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cla05g00372 449 SUPERFAMILY Pectin lyase-like 77 444 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00372 Cla06g00739 CCT
Cla05g00372 Cla06g00739 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00372 Cla-Chr5:3399550 Cla05g02174 Cla-Chr5:33325321 0 dispersed
Cla05g02468 Cla-Chr5:36113391 Cla05g00372 Cla-Chr5:3399550 1.06E-167 dispersed
Cla03g00314 Cla-Chr3:3763924 Cla05g00372 Cla-Chr5:3399550 0 transposed
Cla08g01714 Cla-Chr8:29708349 Cla05g00372 Cla-Chr5:3399550 0 transposed
Cla09g01903 Cla-Chr9:36705078 Cla05g00372 Cla-Chr5:3399550 0 transposed
Cla05g00372 Cla-Chr5:3399550 Cla06g00739 Cla-Chr6:9598542 0 wgd
Cla05g00372 Cla-Chr5:3399550 Cla07g00163 Cla-Chr7:1854874 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00372 K01728 - csv:101218188 850.121