Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00379 TCTATCAACACTTCGTACTTCGTTGTACAACTTCGAGACAAGCATCCCGTTTTATCTCTGAAACTGCGACGTGGCAATCTTCGGGACTCAGATATACGGATTTGTTGGCGGAGATTCAACTCCAGTTTGGAGCTATTTTCCGGTTCAACCGCCGCCCGCCGGCGAGAATTATGGCTTTTCAGTAGAAGAGAACGAGACATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTTGATTCTTTGCCCAGTTGTTCTGCTTCTGGCAGTGCATTTTCTAAGACGATATTAACATCGCTGAAACATAGAAGAGTGACGAGATTGAACGGGACGTGTGGTAAAATCAGAGCACATTCTTCCAATGTAAGCATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTGTTTCCAGTAGTGCACCTGTTGATATCAATTCATCTAAAACTGAGAAATCTCCAAATGGATTGCCTTACCCTCTTTCTTTTGCGCTAGTACTAATTGGATGTGGTTTAGTATTCTCGCTGATTGCCTTTGTGAAGGGAGGACCTTCATCAATCTTGGCTGCAGTTGCAAAGTCAGGGTTCACTGCTGCCTTCTCATTAATATTTGTCTCTGAAATTGGAGACAAGACGTTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTTCTGTTAGGATCTATGGGAGCACTTTCACTCATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAACTTTACCAATCGGAGAATATGCAGCAGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGATCTTCCCTCGAGTGTTCCTAAACAAGGTGATGAGAGTGGCCCAGAACTTGATGAATATGTCGAAGCAGAGGAGCTTGTTAAAGAAAAGGTTTCAAAACGGCTCTCCAATCCACTTGAAATCATTTGGAAGTCGTTCAGCCTTATATTTTTCGCCGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCGCAGTCTCCATGGGGGGTGGCGACGGGAGCTATCACTGGACACCTAATTGCAACTACCATTGCCATTCTAGGAGGAGCATTACTTGCCAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGCGGTGTACTCTTCTTAATTTTTGCAATAGCAACGTTTTTTGGAGTTTTCTGA 1272 44.81 SINTSYFVVQLRDKHPVLSLKLRRGNLRDSDIRICWRRFNSSLELFSGSTAARRRELWLFSRRERDMEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIRAHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSFALVLIGCGLVFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3479764 3483946 + ClCG05G003650.1 Cla05g00379 271869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00379 423 ProSitePatterns Uncharacterized protein family UPF0016 signature. 221 230 IPR001727 -
Cla05g00379 423 MobiDBLite consensus disorder prediction 153 167 - -
Cla05g00379 423 MobiDBLite consensus disorder prediction 145 167 - -
Cla05g00379 423 PANTHER PROTEIN PAM71-HOMOLOG, CHLOROPLASTIC 101 423 - -
Cla05g00379 423 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 101 423 IPR001727 -
Cla05g00379 423 Pfam Uncharacterized protein family UPF0016 342 415 IPR001727 -
Cla05g00379 423 Pfam Uncharacterized protein family UPF0016 212 290 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00379 - - - bhj:120087383 646.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00208 Cla-Chr1:2106098 Cla05g00379 Cla-Chr5:3479764 2.95E-48 dispersed
Cla05g00379 Cla-Chr5:3479764 Cla08g00530 Cla-Chr8:16191739 9.71E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g837 . . . . . . . . . . Cma06g01271 . Car06g01092 . . Cpe08g00377 . Bhi01g00013 . . . . . . . . . . . . . . . . Cone4ag0380 Lsi05g01803 . . Cme06g00417 . Blo07g00293 Bda11g00656 . . . . Bma06g01304 . Cmo06g01279 . . . . . . . . . . . . . . Cla05g00379 Cam05g0412 Cec05g0417 Cco05g0417 Clacu05g0408 Cmu05g0391 Cre05g0453 . Csa03g01136 Chy06g00402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010246 1 2 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00379 Cla_Chr05 FPKM 0.525986 0.672364 1.505304 1.691612 4.143848 3.619786 4.428533 2.099629 1.59589 1.925869