Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00384 ATGAGACGTTACATCTTCTTTTTGTACCTTTATACAGACCTGGAATCACTACCCAACATTCTTCAAAAGAAGTATGCTTTGCTGCGTGATTTAGATCAAAGTTTGCAAGGACTAGTAAAACAGAATGAGCAACGCTGTGAGCAAGAAATTGAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTACTCCTGATACTTCACTCATCAGATTCTCCGATGAAGCTCTTGATGAGCAGAAGCATAGCATCAGAATTGCAGATGAAAAGGTTGCCCTTGCTGTTCAGGCATATGATTTGGTAGATACCCACATACAACAACTTGACCAGTATTTGAAGAATTTTGATGAAAAGCTTCGTCAAGAAAGAGGAAGTGCTGCTGCAACTGGGTTACCAGCTCCCAATGTGGATGGTAACACAAAATCTGGACGGGTAACAGAAGGTGGTAGAGGCGGGCGTAAAAACAAGAGATTGAGGACATCGTCAATAATGAGAACTATTTTCTACAGAAGAAGTGGCCAGGCTGCTGCTACAGAAGTACCAACTGCTGCAACTCCCACAGGAATGGAACTTGAATTACCAGTTGATCCAAATGAACCAACTTACTGTCTCTGCAACCAAGTTAGTTACGGGGAGATGGTTGCCTGTGATAACCCTAATGCACGAAAGGTCGGCGAAAAGGCAGATAATACAGAAAGCAATCTAGAAGATCCTCCATTAAAGATGGAAGAAGTGAAACTCCATGGGATGTGGGCAAGTCCTTTTACTTACAGAGTGAAATGGGGTTTGGAGCTTAAGGGCATACCATACCAATACGTAGAAGAAGATATCACCAACAAATCTCCATTGCTGCTTCACTACAATCCTCTTCACAAGAAGGTTCCTGTGCTCGTTCATGGCGGAAAACCAGTGTGCGAGTCCATCGTCATCCTCGAATACATGGATGAAATATGGCCTCAATATCCTCTCTTTCCAATCAATCCCTTCGATAGAGCAATGGCTCGCTTTTGGATTAAATATACAGACAACAAGTTATTTGGAAATCGGCTTCTGTTCGGTTCCGGCAGCGGCGAAGAAGCTGAAAAAGCTAGGGCGGAGGGAATTGAATTCCTGAGAACAATCGAAGAACAATGCCTTGGCGACAAGAAATTCTTCGCCGGAGAGGCGATCGGCGCCCTGGATTTGGCGTTCGGAGGAATCGCTCAGTGGCTACCAGTTCTTGAAGAAGTTTCAGGGTGGAAGCTTCTGAACGCCGATGAATTCCCTCGCTTGTACGCTTGGACCAAAAACTTCAAGGAAGCTGCTGTGATCAGAGATAACCTACCGGACGCCGACAAGTTGGCCGGACTTTACAACCGCCTGCGCGACCAGCGGCTGCGATCTGCGGCAGAGTAA 1392 45.33 MRRYIFFLYLYTDLESLPNILQKKYALLRDLDQSLQGLVKQNEQRCEQEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEKLRQERGSAAATGLPAPNVDGNTKSGRVTEGGRGGRKNKRLRTSSIMRTIFYRRSGQAAATEVPTAATPTGMELELPVDPNEPTYCLCNQVSYGEMVACDNPNARKVGEKADNTESNLEDPPLKMEEVKLHGMWASPFTYRVKWGLELKGIPYQYVEEDITNKSPLLLHYNPLHKKVPVLVHGGKPVCESIVILEYMDEIWPQYPLFPINPFDRAMARFWIKYTDNKLFGNRLLFGSGSGEEAEKARAEGIEFLRTIEEQCLGDKKFFAGEAIGALDLAFGGIAQWLPVLEEVSGWKLLNADEFPRLYAWTKNFKEAAVIRDNLPDADKLAGLYNRLRDQRLRSAAE 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3501840 3507964 + ClCG05G003690.2 Cla05g00384 271874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00384 463 Pfam Glutathione S-transferase, C-terminal domain 358 430 IPR004046 -
Cla05g00384 463 PANTHER GLUTATHIONE S-TRANSFERASE 241 455 - -
Cla05g00384 463 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 326 463 IPR010987 -
Cla05g00384 463 CDD ING_plant 14 111 - -
Cla05g00384 463 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 241 455 IPR045073 -
Cla05g00384 463 SMART ING_2 9 114 IPR024610 -
Cla05g00384 463 SFLD Main.3: Omega- and Tau-like 240 458 IPR045073 -
Cla05g00384 463 SUPERFAMILY GST C-terminal domain-like 315 455 IPR036282 -
Cla05g00384 463 Gene3D Glutaredoxin 239 325 - -
Cla05g00384 463 CDD GST_C_Tau 327 446 IPR045074 GO:0004364|GO:0006749
Cla05g00384 463 CDD GST_N_Tau 244 317 - -
Cla05g00384 463 SFLD Glutathione Transferase (cytosolic) 240 458 IPR040079 -
Cla05g00384 463 SUPERFAMILY FYVE/PHD zinc finger 185 219 IPR011011 -
Cla05g00384 463 Gene3D - 9 111 - -
Cla05g00384 463 Pfam Inhibitor of growth proteins N-terminal histone-binding 13 114 IPR024610 -
Cla05g00384 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 225 IPR013083 -
Cla05g00384 463 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 242 321 IPR004045 -
Cla05g00384 463 Gene3D - 326 461 - -
Cla05g00384 463 SUPERFAMILY Thioredoxin-like 244 344 IPR036249 -
Cla05g00384 463 Pfam Glutathione S-transferase, N-terminal domain 243 314 IPR004045 -
Cla05g00384 463 MobiDBLite consensus disorder prediction 123 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00384 K11346 ING4; inhibitor of growth protein 4 K00799 csv:101220801 421.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00537 Cla-Chr4:18926606 Cla05g00384 Cla-Chr5:3501840 6.50E-23 dispersed
Cla05g00384 Cla-Chr5:3501840 Cla05g00390 Cla-Chr5:3521607 4.83E-14 dispersed
Cla05g00384 Cla-Chr5:3501840 Cla05g00387 Cla-Chr5:3515056 6.65E-78 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00384 Cla_Chr05 FPKM 3.532222 3.730461 4.234939 4.139121 5.69758 6.014798 6.337464 9.382938 7.551658 8.458565