Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00390 ATGACAGAAGTGAAGCTCCATGGAGCTTGGCCAAGTCCATTCAGTTACAGAGTCATTTGGGCTCTGGCTCTCAAAGGCATTCCATACGAATACATAGAAGAAGATCTCGCCAACAAATCTCCTCTGCTTTTGCAATACAATCCCGTTCACAAGAAGATTCCAGTCCTCGTCCATGCCGGAAAACCCATCTGCGAATCCTCCATCATCCTCCAGTACATCGACGATACCTGGCCAGAGAATCCCCTTTTGCCTTCCGATCCTTTTCAGAGAGCTTCCGCTCGGTTCTGGATCAAGTTCATAGAAGACAAGAGCTCGGAGATTTGGGGAGTATTTGTTGCGGAAAAGGAAGAAGATAAGGAAAAGGCGAGAAAAGCGACCTTGGAAGTGTTGAAGACGGTGGAAGAACAAGGACTCGGCGACAAGAAATTCTTCGGCGGCGATGAAATCAACATGGTGGATTTGGCGTATGGCTTCCTCGCGCGGTGGCTGCCGGTGGTTGAAGAGTTGGTGGATGTGAAAATCCTTGAACCAAATACGGTCCCTCGCCTCTATGCTTGGGCGGAGAACTTCCGGCAAGCCGCCGTGATCAGAGACAATCTGCCGGATCACGACGACATGGTGCCGCGGCTCAAGTTCAGGAGGGAGCATTTTTGGATTCAGGGAGCGGCCGTATCGAGAATGTTCTGTTCCGGCGAGAAGGAACAGAGGAAGGCGAAGCAGGAAAGCTTAGAAATGCTGCGAATCTTAGAAGAGCAAGTGATCAGTAGAGAGAAGATCGGGACGGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAAAGGTAATCGGCGAGAAATTGATGGAATCAGATTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGGTTTCATGGCAGCTCCAGCGATCAAAGAGAGTCGTGCCGGGTCGAGATCGGATGGTAGAGGAGCCACCGCTCGCTTCTGGATCAAATTCATTGAGGATAAGGAAGCGACGATTAGGAGGATTTTTACGGCGGGAGAGGAAGAGAGAGAGGAGGCGAGGAAAGAAACCCTAGAAGTGCTGAGGACGATCGAGGAGCTGGGCCTCGGCAACGGGAAATTCTTCGGAGGAGAGGAGATTAATATGATTGATTTGGTGTATGGATGGATCGCCGTGTGGATGAAGGTTTTTGAAGAAGTTCTGGATATGAAACTTATGGAAGGACTTGAGGTCCCTCGCCTCCATGCTTGGGTGGAGAACTTCAAAGCCGCCGCCGTTATCAGAGATCATATTCCCGATCACCATCAAATGGTCCTCCATCTCCGCCGCCGCCGAGAGGAACTGCTTCAATCTCTCCCAAACTAG 1356 50.52 MTEVKLHGAWPSPFSYRVIWALALKGIPYEYIEEDLANKSPLLLQYNPVHKKIPVLVHAGKPICESSIILQYIDDTWPENPLLPSDPFQRASARFWIKFIEDKSSEIWGVFVAEKEEDKEKARKATLEVLKTVEEQGLGDKKFFGGDEINMVDLAYGFLARWLPVVEELVDVKILEPNTVPRLYAWAENFRQAAVIRDNLPDHDDMVPRLKFRREHFWIQGAAVSRMFCSGEKEQRKAKQESLEMLRILEEQVISREKIGTVDLAFGQFVEWLGVFEKVIGEKLMESDSFPRLEAWSRGFMAAPAIKESRAGSRSDGRGATARFWIKFIEDKEATIRRIFTAGEEEREEARKETLEVLRTIEELGLGNGKFFGGEEINMIDLVYGWIAVWMKVFEEVLDMKLMEGLEVPRLHAWVENFKAAAVIRDHIPDHHQMVLHLRRRREELLQSLPN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3521607 3526286 + ClCG05G003780.1 Cla05g00390 271880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00390 451 CDD GST_C_Tau 320 441 IPR045074 GO:0004364|GO:0006749
Cla05g00390 451 CDD GST_N_Tau 4 77 - -
Cla05g00390 451 SFLD Main.3: Omega- and Tau-like 1 218 IPR045073 -
Cla05g00390 451 CDD GST_C_Tau 87 213 IPR045074 GO:0004364|GO:0006749
Cla05g00390 451 Gene3D - 86 217 - -
Cla05g00390 451 Gene3D - 318 449 - -
Cla05g00390 451 Gene3D - 218 313 - -
Cla05g00390 451 SUPERFAMILY GST C-terminal domain-like 320 443 IPR036282 -
Cla05g00390 451 SUPERFAMILY GST C-terminal domain-like 75 217 IPR036282 -
Cla05g00390 451 SFLD Glutathione Transferase (cytosolic) 1 218 IPR040079 -
Cla05g00390 451 SUPERFAMILY GST C-terminal domain-like 221 309 IPR036282 -
Cla05g00390 451 Gene3D Glutaredoxin 1 85 - -
Cla05g00390 451 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 320 443 IPR045073 -
Cla05g00390 451 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 222 309 IPR045073 -
Cla05g00390 451 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 215 IPR045073 -
Cla05g00390 451 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 217 IPR010987 -
Cla05g00390 451 Pfam Glutathione S-transferase, N-terminal domain 4 74 IPR004045 -
Cla05g00390 451 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 315 438 IPR010987 -
Cla05g00390 451 PANTHER GLUTATHIONE S-TRANSFERASE 222 309 - -
Cla05g00390 451 PANTHER GLUTATHIONE S-TRANSFERASE 320 443 - -
Cla05g00390 451 PANTHER GLUTATHIONE S-TRANSFERASE 1 215 - -
Cla05g00390 451 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cla05g00390 451 Pfam Glutathione S-transferase, C-terminal domain 106 190 IPR004046 -
Cla05g00390 451 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00390 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 391.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00753 Cla-Chr4:22544159 Cla05g00390 Cla-Chr5:3521607 8.21E-07 dispersed
Cla04g01202 Cla-Chr4:27190439 Cla05g00390 Cla-Chr5:3521607 5.97E-06 dispersed
Cla05g00384 Cla-Chr5:3501840 Cla05g00390 Cla-Chr5:3521607 4.83E-14 dispersed
Cla05g00390 Cla-Chr5:3521607 Cla06g01435 Cla-Chr6:27926213 1.42E-06 dispersed
Cla10g01965 Cla-Chr10:35475347 Cla05g00390 Cla-Chr5:3521607 7.92E-08 dispersed
Cla05g00387 Cla-Chr5:3515056 Cla05g00390 Cla-Chr5:3521607 3.89E-11 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00390 Cla_Chr05 FPKM 14.428432 19.173109 23.354647 25.965038 64.184845 55.91404 65.959564 6.551265 6.598284 6.125255