Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00392 ATGATGAATAATACCTGTATCAGTATTCCTCCATTGGCTCAGACCATTGATGGTGATCACTTCTTTGATCACCGGTGTATATGGGTCAATGGACCAGTGATCGTCGGAGCGGGACCATCTGGATTGTCAGTAGCGGCTGCTCTCAAACAACAAGGCGTCCCATTCGTGGTTGTCGACCGAGCTGACTGCATTGCCTCTCTTTGGCAACACCGGACCTATGATCGTCTCAAACTTCACCTTCCAAAGCAATTCTGTCAACTTCCCAACTTCCCTTTCCCAGAGGAGTTTCCTGCTTACCCCTCCAAGTTTCAGTTCATTTCCTACTTGGAATCCTATGCCAACCATTTTGATATCACCCCACGTTTCAATGAGACGGTACAGTCAGCCAAGTATGATGAAACTTTCGGCCTGTGGCGAGTCAAAACCCTTTCCTTGAGTCCCAAGCCGACCCAAGTCGAGTACATTTGCCGGTGGTTGGTCGTCGCCACGGGAGAAAATGCTGAGAAGGTTGTGCCAGAGTTTGAAGGGATGGAGGAGTTTGGTGGCCATGTTATGCATGCTTGCGAGTACAAATCTGGTGAGGCTTACCATGGGAAACGGGTGCTTGTCGTCGGGTGCGGGAACTCCGGCATGGAAATTTCACTTGATCTTTGTAACCATGACGCCAAGCCATCCATGGTGGTACGAAGCTCGGTTCATGTATTGCCAAGAGAAATACTTGGAAAATCAACTTTTGAAGTAGCAATTTCACTAATGAAATGGCTGCCACTTCATATGGTGGACAAGATGCTGCTGATCATTTCCAGACTTGTTCTTGGGAACATTGAGAAGTATGGACTCAAAAGGCCATCAATGGGACCTTTGCAGCTTAAGAACGCAGCTGGGAAGACACCCGTGTTGGATATCGGAGCGCTGCAGAAGATAAGGGCCGGCGAGATCAAGGTGGTGCCCGGAATTAAAAAATTCCGGCGAGGTGCAGTGGAGCTGGTCAATGGAGAAGTTCTAGAGATTGATTCTGTAATTCTAGCTACTGGCTATCGCAGCAATGTTCCATCTTGGCTCAAGTATTTGATTGCACAGGAAAATGAGTTCTTTTCCAGTGATGGGATTCCAAAAAGTCCATTCCCAAATGGGTGGAAAGGCAAAGCTGGACTCTATGCTGTTGGGTTCACAAGAAAAGGCTTATCAGGAGCTTCATTGGACGCCATTAATGTAGCTCAGGACATTGCCAAGAGCTGGAAAGAAGATACTAAACAGAAGAGAAAATCAGTGGCAGCTCGCCATAGAAGATGCATTTCACATTTCTATTGTGCAATTTTTGTTGATCCACAGGTTCATGTATTGCCAAGAGAAATACTTGGAAAATCAACTTTTGAAGTAGCAATTTCACTAATGAAATGGCTGCCACTTCATATGGTGGACAAGATGCTGCTGATCATTTCCAGACTTGTTCTTGGGAACATTGAGAAGTATGGACTCAAAAGGCCATCAATGGGACCTTTGCAGCTTAAGAACGCAGCTGGGAAGACACCCGTGTTGGATATCGGAGCGCTGCAGAAGATAAGGGCCGGCGAGATCAAGGTGGTGCCCGGAATTAAAAAATTCCGGCGAGGTGCAGTGGAGCTGGTCAATGGAGAAGTTCTAGAGATTGATTCTGTAATTCTAGCTACTGGCTATCGCAGCAATGTTCCATCTTGGCTCAAGTATTTGATTGCACAGGAAAATGAGTTCTTTTCCAGTGATGGGATTCCAAAAAGTCCATTCCCAAATGGGTGGAAAGGCAAAGCTGGACTCTATGCTGTTGGGTTCACAAGAAAAGGCTTATCAGGAGCTTCATTGGACGCCATTAATGTAGCTCAGGACATTGCCAAGAGCTGGAAAGAAGATACTAAACAGAAGAGAAAATCAGTGGCAGCTCGCCATAGAAGATGCATTTCACATTTCTAG 1947 46.22 MMNNTCISIPPLAQTIDGDHFFDHRCIWVNGPVIVGAGPSGLSVAAALKQQGVPFVVVDRADCIASLWQHRTYDRLKLHLPKQFCQLPNFPFPEEFPAYPSKFQFISYLESYANHFDITPRFNETVQSAKYDETFGLWRVKTLSLSPKPTQVEYICRWLVVATGENAEKVVPEFEGMEEFGGHVMHACEYKSGEAYHGKRVLVVGCGNSGMEISLDLCNHDAKPSMVVRSSVHVLPREILGKSTFEVAISLMKWLPLHMVDKMLLIISRLVLGNIEKYGLKRPSMGPLQLKNAAGKTPVLDIGALQKIRAGEIKVVPGIKKFRRGAVELVNGEVLEIDSVILATGYRSNVPSWLKYLIAQENEFFSSDGIPKSPFPNGWKGKAGLYAVGFTRKGLSGASLDAINVAQDIAKSWKEDTKQKRKSVAARHRRCISHFYCAIFVDPQVHVLPREILGKSTFEVAISLMKWLPLHMVDKMLLIISRLVLGNIEKYGLKRPSMGPLQLKNAAGKTPVLDIGALQKIRAGEIKVVPGIKKFRRGAVELVNGEVLEIDSVILATGYRSNVPSWLKYLIAQENEFFSSDGIPKSPFPNGWKGKAGLYAVGFTRKGLSGASLDAINVAQDIAKSWKEDTKQKRKSVAARHRRCISHF 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3538043 3541038 - ClCG05G003800.1 Cla05g00392 271882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00392 648 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 16 433 - -
Cla05g00392 648 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 440 646 - -
Cla05g00392 648 Pfam Flavin-binding monooxygenase-like 34 356 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla05g00392 648 PRINTS Pyridine nucleotide disulphide reductase class-II signature 196 220 - -
Cla05g00392 648 PRINTS Pyridine nucleotide disulphide reductase class-II signature 31 53 - -
Cla05g00392 648 SUPERFAMILY FAD/NAD(P)-binding domain 510 628 IPR036188 -
Cla05g00392 648 Gene3D - 32 419 IPR036188 -
Cla05g00392 648 Gene3D - 444 632 IPR036188 -
Cla05g00392 648 PRINTS FAD-dependent pyridine nucleotide reductase signature 156 174 - -
Cla05g00392 648 PRINTS FAD-dependent pyridine nucleotide reductase signature 32 51 - -
Cla05g00392 648 PRINTS FAD-dependent pyridine nucleotide reductase signature 200 218 - -
Cla05g00392 648 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 16 433 - -
Cla05g00392 648 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 440 646 - -
Cla05g00392 648 SUPERFAMILY FAD/NAD(P)-binding domain 33 232 IPR036188 -
Cla05g00392 648 SUPERFAMILY FAD/NAD(P)-binding domain 196 414 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00392 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221268 857.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00392 Cla-Chr5:3538043 Cla05g01129 Cla-Chr5:11909056 1.21E-37 dispersed
Cla01g01065 Cla-Chr1:16790868 Cla05g00392 Cla-Chr5:3538043 7.34E-11 transposed
Cla03g01419 Cla-Chr3:29739174 Cla05g00392 Cla-Chr5:3538043 5.95E-19 transposed
Cla06g00846 Cla-Chr6:12570165 Cla05g00392 Cla-Chr5:3538043 4.09E-67 transposed
Cla06g01185 Cla-Chr6:25060480 Cla05g00392 Cla-Chr5:3538043 5.39E-16 transposed
Cla08g00973 Cla-Chr8:22378804 Cla05g00392 Cla-Chr5:3538043 1.31E-15 transposed
Cla08g01237 Cla-Chr8:25283922 Cla05g00392 Cla-Chr5:3538043 1.54E-70 transposed
Cla08g01296 Cla-Chr8:25862296 Cla05g00392 Cla-Chr5:3538043 4.99E-73 transposed
Cla05g00392 Cla-Chr5:3538043 Cla06g00122 Cla-Chr6:1305888 4.78E-91 wgd
Cla05g00392 Cla-Chr5:3538043 Cla07g00144 Cla-Chr7:1663278 1.07E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00392 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0