Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00396 ATGAGGAGAAATGGGAGAACTGATTCGTCTCTTTGCAGTCCTTTCGTCTTCCTCCTTTCTCTGAACTCCAAAAAAATGGATTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTCGGCCCCAACACAACCAACGCCACCGCCGCTGCTAATTTCATCTGCGATCAGTTCACCACCGTCACCAACAACTTCTCCGACACCAAAAATGCCCTCGACAACACCTACCTACTCTTCTCCGCCTACCTTGTCTTTTCTATGCAACTCGGCTTCGCTATGCTCTGCGCCGGCTCCGTCCGCGCCAAAAACACAATGAACATCATGCTCACCAATGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTATTACCTTTTCGGCTACGCCTTCGCCTTCGGCTCCCCGTCCAATGGCTTCATCGGCCGCCATAACTTCGGTCTCACCTCCTTTCCGACCTCCACTGCCGATTACAGCTTCTTCCTCTACCAATGGGCCTTTGCGATTGCTGCCGCCGGGATTACCAGTGGATCTATCGCCGAGCGGACTCAGTTCGTCGCCTATTTGATTTATTCCTCTGTTTTGACTGGATTCGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCTCCCGATGGTTGGGCTGGGGTTATGAAATCGGATGGCGGACTGTTGTTTGGATCGGGAGTTATCGACTTCGCCGGCTCCGGCGTCGTTCATATGGTTGGAGGAGTTGCTGGTCTATGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTCGACCACACCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCTTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTCACCACCACGCTCGCCGGATGCACGGCAGCACTCACCACGCTCTTCGGGAAGCGATTCCTCTCAGGGCACTGGAACGTGACGGACGTTTGTAACGGGCTCCTTGGGGGCTTCGCCGCCATCACCGCCGGCTGTTCCGTCGTCGAGCCATGGGCAGCAATCATTTGCGGATTCGTCGCCGCTCTCGTGCTAATAACCTGCAACCGAATCGCAGAGAAAGCAAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGCGGTTGCGGCGCGTGGGGAGTTATATTCACAGCACTCTTCGCAACGAAGGAGTACGTAACGGAAGTATACGGCGGATCGGGGCGTCCGTACGGACTCCTGATGGGCGGCGGCGGGAGGTTACTGGCAGCGCATTTGGTACAGATTTTGGTGATCGTGGGGTGGGTGAGCGCAACGATGGGGCCATTGTTCTTTGTTCTTCACAAATTGAAGCTTCTGAGAATCTCCTCTGAAGATGAAATGGCGGGAATGGATCTGACCCGCCATGGCGGATTTGCGTACATTTATCATGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTAGAACCTAAATCTGCAACTCCAACCGGAGATTATTGA 1578 55.13 MRRNGRTDSSLCSPFVFLLSLNSKKMDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLTSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGGLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLITCNRIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLVQILVIVGWVSATMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSATPTGDY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3596803 3598661 - ClCG05G003845.1 Cla05g00396 271886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00396 525 PANTHER AMMONIUM TRANSPORTER 31 519 - -
Cla05g00396 525 TIGRFAM amt: ammonium transporter 72 496 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cla05g00396 525 SUPERFAMILY Ammonium transporter 69 477 - -
Cla05g00396 525 Gene3D Ammonium transporter AmtB like domains 50 515 IPR029020 -
Cla05g00396 525 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 31 519 - -
Cla05g00396 525 ProSitePatterns Ammonium transporters signature. 228 253 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cla05g00396 525 Pfam Ammonium Transporter Family 75 496 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00396 Cla-Chr5:3596803 Cla06g00721 Cla-Chr6:9209585 0 dispersed
Cla01g02014 Cla-Chr1:34754990 Cla05g00396 Cla-Chr5:3596803 1.07E-17 transposed
Cla07g01480 Cla-Chr7:32066972 Cla05g00396 Cla-Chr5:3596803 1.33E-19 transposed
Cla05g00396 Cla-Chr5:3596803 Cla07g00136 Cla-Chr7:1555244 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00396 K03320 - csv:101208366 912.138